Cfor028413.1
Basic Information
- Insect
- Chloromyia formosa
- Gene Symbol
- -
- Assembly
- GCA_964017055.1
- Location
- OZ024816.1:102326393-102327631[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 1.2 1.2e+02 4.6 0.0 2 23 54 76 53 76 0.92 2 10 0.24 25 6.8 4.1 2 23 161 183 160 183 0.92 3 10 0.029 3 9.7 0.7 3 23 189 209 188 209 0.96 4 10 0.074 7.6 8.4 1.5 1 23 215 238 215 238 0.88 5 10 1.3e-05 0.0013 20.2 1.5 1 23 244 266 244 266 0.96 6 10 0.00014 0.014 17.0 3.3 1 23 272 294 272 294 0.98 7 10 0.0004 0.041 15.5 1.5 1 23 300 322 300 322 0.98 8 10 1.8e-05 0.0019 19.8 2.6 2 23 329 350 328 350 0.96 9 10 0.00021 0.022 16.4 1.1 1 23 356 378 356 378 0.97 10 10 7.8e-06 0.00081 20.9 0.3 1 23 384 406 384 406 0.98
Sequence Information
- Coding Sequence
- ATGGAAGAACCTTCAACCACAAACTATTCACAACAAGTGAAAGGTATTGAACGCGAATTTATTGTCAAGGAAGAAATACTGGACGCATTCAACGATGGCGTGGAAGATCCCCTGAAATGTGGCGAGGTATTGCTATTTCGTACCGACCGTATGGTCCTTATATGTGGCTTTTGTGAGGAATCATATGGCGATATGAATGAATTCGGTGCTCACATCCAAGAAAAACACATAAGTAAACAGCAGACTATTGAAAATGTTAATGAGATCCCAAAACACGAGACGACAGCGTCCGAGGATGGGGACGAACACTCACAACATAGTGAGGACTACATACCCCATGATGAAACTGTTTGTTCAAATTTCAATATTACTTTGAAGATTGATGACACGCTAGGCGAAAATATAGACAAAGAACGTCAGATCCAAAAACGACCACTTAAAACGAGGGCTGAAAAGATGAACATTCAAAATCCCACCTTGTATTGTACGATTTGCAAGATACAGTTTAAATTTAAGGCATGTTTCCTTAAACATAACGAAAAGAATCACAATTTACTCCGACCGTGTCTATTTTGTAAGAAAACCTTTGCTTCCCTAGAAGAACGGTCAGAGCACGAAAAAACTCATGTTGGCGACTCTCAATATACCTGTCCGCAATGTCCAATAATGTTCAAAAATGGTAATTGCCGCGACAAACACGTTAAAAACGTGCATGAAAGCATCAAAACACACAAATGCTCAATGTGCGATCGTTCATTTGCTACGAGAACCTTGTTGCGGGCTCATCGTGGTGTCCATCCATTGCCCAGCCGACACAGTTGCGAAATTTGTGGCCGTCAGTTTGCATACAAGTCGAGGAAGCGGCTACATATGCGCACGCACGCTGGCGACAAGTTGTACCAATGCGAAGAGTGCGGGAACCGATATATGAGTCAAACAATGCTCACCAATCACAAGAAACAGCACACGGGCGTAAAAGATGTCGAATGCAAAACTTGTGGCAAGATGTTTTATACTAAGCGTCATCTGGCGCATCATGTAATAATACATTCCTCAGTGAAAAGACACTCGTGTCCGACATGTGGAGATTCCTTTAAAAAAGGCGATGCCCTGAAGCAGCACATGAAACTGCATTCCAATGTAAAGGAGTATTCGTGTAATATTTGTGGGAAGCAGTTTGCCCAGGCCGCCGGATTATATTCACATAAAAAGTCACATTTGAAAGATGCAGCCGAATGA
- Protein Sequence
- MEEPSTTNYSQQVKGIEREFIVKEEILDAFNDGVEDPLKCGEVLLFRTDRMVLICGFCEESYGDMNEFGAHIQEKHISKQQTIENVNEIPKHETTASEDGDEHSQHSEDYIPHDETVCSNFNITLKIDDTLGENIDKERQIQKRPLKTRAEKMNIQNPTLYCTICKIQFKFKACFLKHNEKNHNLLRPCLFCKKTFASLEERSEHEKTHVGDSQYTCPQCPIMFKNGNCRDKHVKNVHESIKTHKCSMCDRSFATRTLLRAHRGVHPLPSRHSCEICGRQFAYKSRKRLHMRTHAGDKLYQCEECGNRYMSQTMLTNHKKQHTGVKDVECKTCGKMFYTKRHLAHHVIIHSSVKRHSCPTCGDSFKKGDALKQHMKLHSNVKEYSCNICGKQFAQAAGLYSHKKSHLKDAAE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00322935;
- 90% Identity
- -
- 80% Identity
- -