Basic Information

Insect: Chloromyia formosa
Gene Symbol: -
Assembly: GCA_964017055.1
Location: OZ024817.1:81055361-81074141[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.00021 0.022 16.4 0.3 1 21 260 280 260 281 0.94

2 14 0.028 2.9 9.7 0.1 2 23 289 311 288 311 0.90

3 14 5.3 5.5e+02 2.6 0.1 3 21 319 337 318 338 0.77

4 14 1.5e-05 0.0016 20.0 3.0 3 23 347 367 346 368 0.95

5 14 0.051 5.2 8.9 7.6 1 23 373 396 373 396 0.93

6 14 0.00086 0.089 14.5 0.7 1 23 402 424 402 424 0.98

7 14 7.4e-05 0.0077 17.8 1.1 1 23 430 452 430 452 0.96

8 14 0.001 0.11 14.2 3.5 3 23 460 480 459 480 0.98

9 14 0.028 2.9 9.7 0.5 3 23 487 508 485 508 0.89

10 14 1.4e-05 0.0014 20.1 1.3 1 23 523 545 523 545 0.99

11 14 5.7e-05 0.0059 18.2 4.6 1 23 552 575 552 575 0.97

12 14 0.0067 0.69 11.7 0.4 1 23 581 603 581 603 0.97

13 14 9.5e-06 0.00098 20.6 1.0 1 23 609 631 609 631 0.97

14 14 0.69 72 5.3 0.3 1 23 637 660 637 660 0.80

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.00021	0.022	16.4	0.3	1	21	260	280	260	281	0.94
2	14	0.028	2.9	9.7	0.1	2	23	289	311	288	311	0.90
3	14	5.3	5.5e+02	2.6	0.1	3	21	319	337	318	338	0.77
4	14	1.5e-05	0.0016	20.0	3.0	3	23	347	367	346	368	0.95
5	14	0.051	5.2	8.9	7.6	1	23	373	396	373	396	0.93
6	14	0.00086	0.089	14.5	0.7	1	23	402	424	402	424	0.98
7	14	7.4e-05	0.0077	17.8	1.1	1	23	430	452	430	452	0.96
8	14	0.001	0.11	14.2	3.5	3	23	460	480	459	480	0.98
9	14	0.028	2.9	9.7	0.5	3	23	487	508	485	508	0.89
10	14	1.4e-05	0.0014	20.1	1.3	1	23	523	545	523	545	0.99
11	14	5.7e-05	0.0059	18.2	4.6	1	23	552	575	552	575	0.97
12	14	0.0067	0.69	11.7	0.4	1	23	581	603	581	603	0.97
13	14	9.5e-06	0.00098	20.6	1.0	1	23	609	631	609	631	0.97
14	14	0.69	72	5.3	0.3	1	23	637	660	637	660	0.80

Sequence Information

Coding Sequence: ATGAGTGTGCTTGAACTGTACCGCAATACATGCCGCACTTGTGCCGAGCACAAGGGCGATGATATATGCACGCCGCTTTTCGTAGGACCTTCTTCATGCCGACATTCACGTAAGGATGTACTGGCCGAAATGGTGGCGTTCGACTTGAAGATAAAACAAGATGATGGTCTGCCCCAACAAATATGTTCAAAATGCCTGGAAAACTTTCGATTCGTCATAAAATTTCGGGGGGACTGCAAAAATGCCCAGGATATTTTAGAAGCGCTCTACGTTCGCGATGAACACTCTAGTGGGGAGTTGAAGGTCGACGAAAAATACATTGTAGAAGCTGTTAAGTCGGAAGATCCGACAATTAAAACAGAGACCATTGAAACAACTGCGGCGAACTCGACGAAAATCGAAGAAGTGAATATTGACGTTGCCGGATATGAAGGTGAAGAGAATTGGGAGTGCACGTATTTGTTGGAAGAGAAGCCGGAAATCGCTAAAACTAATTCTGATGCGGTAGTTGTCGATGAAGAGGTGGATGGACTTGTTGACGAAGAGGTGGATGGTCTTGTTGATGAAGAGGTGGATGGACTTGTCGATGAGGACGATGACGTGGAAAGCGTCAACTTACAAGGCAATAGTTTCGATGATGCCAATAATAGTGATGCAGAATCAGATGACATCCCCCTAAAGGACTATATGGGAACGAAGAATGCCTCAAGCAAAAAGGAGAAAGAACTGAGACGAAAGATCAATCATAATGAGAGCGCGACATCAAAGCGAACCACCTACCCCTGCAAATATTGTGACAAAGAATGCAAATCGGCCGCGGCACTCGCCCGACACGAAAAAGTCTGCCCGAATTCGACAGGAATTGTTTGCAAAATTTGTACAATGGGATTTGATAGTAAAGAGCTACTGGACACGCACACGGCCGAGAAACACCCAAACGGCGGCGATGCAATCTGTCCCAACTGTTCGTTAACGTTCGAGAGTGTGGAAAAGCGTGACATTCACGTGCGAAAGCAAGCGTGCGTGCAAGGAAAAAATTGTGAGATATGCAATAAATTGTTCAAGACACGAAGTAATTTGAAATCGCATATTGCACGACATCATCGTGCCGGTGAATTTGAATGTTCAATTtgtcacaaaaagttcacacactTGAACAAGTATCGATATCATTGGTCTCATGCCCATGTTGAGAATATGAAATATAAATGCATGTATTGTGAAAAGCCGTTCGCTTCGCAATTCGTGATGCGTGTACATGAACGATCTCACACGGGTGAGCGACCGTTCCTGTGCAATCAGTGTGGTGCAGcTTTCCGCTATCGTACACAATTTCTGGATCATATGAAAACGCACGAGAGCAAACGCGACGTAGCATGCGACACATGCGGACTAACATTCTACACTCATCGACAGCTATCGAATCATAAACGCAAGCATCTTAGTAAAAATCATTTATGCGAATTGTGCAATGAAGCGTTTCCGTACAAGTTGGATTTAAATGCGCACAAATACAATGTACATAAAATTGCCGAATACAATCCAAAACGCCAGATTGACTATCCGTTCAAATGTTCCCAATGTTCCAAGGGATTTTCGGTGCTGACAAGCTTAACAAAACACATAAAAATTCACACGGACACGGAGCGAAAACATGTTTGTCCGCATTGCGGAAATGGATATAAGCGTTCGGATCATTTGAAGCTTCACATAAAACGAATGCATCTGAAAATTACGGAATTCAAATGTGAAGTTTGCGGACGAGAGTATTTGGAGAAATGTGCTCTTAAAGCGCATATGGTGGTGCATGATAGTGCGCGGCCGTTCATTTGTTCCAAGTGTCCTGCATCGTTCAAACGCCAACGATCGCTCAAAGATCATATATTGAAGCACGAAGGCGTAAAAGAGTATGCTTGTGGTATTTGTGATATGCGTTTTTTCAATCGCACCATTGTTGTATTACATACAAAACGCGTCCATTCAGATTCGCAAAAGCAATTTATGTCTGAATTGGTGCGAAAAGAGTTGGAGGACGCCATCACAAAGGGACCCGAGAATTCCGAGACTGGCGAAGATATAAAGGATATAATTAACGTTTGA
Protein Sequence: MSVLELYRNTCRTCAEHKGDDICTPLFVGPSSCRHSRKDVLAEMVAFDLKIKQDDGLPQQICSKCLENFRFVIKFRGDCKNAQDILEALYVRDEHSSGELKVDEKYIVEAVKSEDPTIKTETIETTAANSTKIEEVNIDVAGYEGEENWECTYLLEEKPEIAKTNSDAVVVDEEVDGLVDEEVDGLVDEEVDGLVDEDDDVESVNLQGNSFDDANNSDAESDDIPLKDYMGTKNASSKKEKELRRKINHNESATSKRTTYPCKYCDKECKSAAALARHEKVCPNSTGIVCKICTMGFDSKELLDTHTAEKHPNGGDAICPNCSLTFESVEKRDIHVRKQACVQGKNCEICNKLFKTRSNLKSHIARHHRAGEFECSICHKKFTHLNKYRYHWSHAHVENMKYKCMYCEKPFASQFVMRVHERSHTGERPFLCNQCGAAFRYRTQFLDHMKTHESKRDVACDTCGLTFYTHRQLSNHKRKHLSKNHLCELCNEAFPYKLDLNAHKYNVHKIAEYNPKRQIDYPFKCSQCSKGFSVLTSLTKHIKIHTDTERKHVCPHCGNGYKRSDHLKLHIKRMHLKITEFKCEVCGREYLEKCALKAHMVVHDSARPFICSKCPASFKRQRSLKDHILKHEGVKEYACGICDMRFFNRTIVVLHTKRVHSDSQKQFMSELVRKELEDAITKGPENSETGEDIKDIINV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -