Cfor027878.1
Basic Information
- Insect
- Chloromyia formosa
- Gene Symbol
- -
- Assembly
- GCA_964017055.1
- Location
- OZ024816.1:90203237-90205131[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.5 1.5e+02 4.3 0.1 1 23 52 74 52 74 0.91 2 13 0.00016 0.016 16.8 3.0 1 23 155 178 155 178 0.96 3 13 0.19 20 7.1 0.6 3 21 266 284 264 287 0.93 4 13 0.65 67 5.4 1.8 1 21 304 324 304 327 0.77 5 13 0.0006 0.062 15.0 4.0 1 23 349 372 349 372 0.96 6 13 0.0079 0.82 11.4 0.2 2 23 383 405 382 405 0.92 7 13 1.9e-06 0.0002 22.8 1.4 1 23 411 433 411 433 0.98 8 13 2e-09 2.1e-07 32.2 0.3 1 23 439 461 439 461 0.99 9 13 0.00076 0.079 14.6 3.3 1 23 467 489 467 489 0.97 10 13 0.7 73 5.3 2.2 1 23 495 517 495 517 0.96 11 13 0.00017 0.018 16.7 1.3 1 23 523 545 523 545 0.96 12 13 8.7e-06 0.0009 20.7 0.4 1 23 551 573 551 573 0.97 13 13 2.5e-05 0.0026 19.3 0.9 1 23 579 601 579 601 0.98
Sequence Information
- Coding Sequence
- ATGGATCAAACGATAGTGAAAGAAGAATGGATGGAGGATGAGCCAGAAAGAAGCATCGAACTCGATGAGAGCCCTGGAAATCTCCAAGTTTCCGTAGATCCTACCGTCAAGTGTGGCGAAATATTTGTCCGGGGCAGGAACAGACGTTTCACCTTTATTTGTGCAATTTGTTCAAACCCATTTGAGAGCTTAGGAAGTTTCGGCCAGCATGTAGATTTTCACATAGAAAATGACAAAACCCTGCCTGCCGAATGCATTCAAAAGGATCCACTGACCGACCCCCTTTTATTCCCACGCTTAACTTTGATTCAGGAGAACGAACCACCTATAGAATTGGTAGATGTCAAGCGCGAAGAAGATTATGGGATTGAAATAATTGACGAACATTTCGAAAAACCAGCCTCTGATCAAAACTTTgttcaaaataaaaatctcGACAAAAGTTCTAGTGAAAGTAGGAAATTCCCGTGCCTGAAATGTGGTCGTACGTATAAGCATCGCCAGTCCTTACAAACACACGCTAAAAGGGAACACGCAGAAAAACTGCCTTGTCGTCTTTGCGGGGGGACTTACTGGAACTTGAATGCTCTTCGTTTTCATGAGAAAACTGACCACGGTCTATGGGATCCAAGTCAACAAACGACTACTGCCAACTTATTAAAATTAAGTCAATGCGATTCGGGTATCAACGATGATGAAACGGAGCTGATACCCAGCTGTGAATCAAACAATGCCGAACCCCCCGCCATCATGAAATTCGAAGGAAAAGACTCCGTAGATCGCGAAAAAATCGATTGCCCCAGATGCGAAGGAACGTTTGACAGTCGGCGATCCTTACTGATTCACGTAAGATGCGAGCATGGGGTCGCTATACTTGACGCATTTTTTAACGACTGTGCGGAAATGAAATTTCCCTGCAAGCTATGTGATCGATCGTTCCTTCATTTCGATTCTCtcgaatttcatgaaaaaaatgAACACTGGATGGAGAACCTTGACGAAGATTCGAATACAACTGAACCGAACGCGGAGGGCGAAGGAAAATTTTCCTGCATGTTTTGCAATCGAACTTACTCTCATATGCGAAATCTTCGGCGACACGTAAAAATCGACCATGGCGATGGATTAGTAAATGGCGACGAATTAACATGTCGCTACTGTGACAAAATATTCCCCGCCAAAACCGAATACAACATACACGTCGAAAACGACCACCCCGGAACGAACAAGTTTCCATGTCCGCATTGTCCGAAGTTTTTCAAGAGCGCCACCAATCTCACGGATCATGTCTACACGCATACGGGCGAGCGGCCGTTCAAATGCAACGATTGTGGTAAAGGATTTGCCAACCAGTCGAATCTTAATGTTCACATCCGGATGCATAAGCGAATCAAGAATCATACGTGCACGTTCTGTCCCAAGTCGTTTGTAACGAGCACCGAGAAAAAACGCCATGAACAGATACACACGGGCGAGCGGCCGCATCAGTGTGAAGAGTGCGGTTCACGATATCCATGCTTAGCCAAGCTAAAAGAACATTTGGATCGACATCGAAATATTAAAAACTACAAATGCGACATATGCGAAAAACAGTTTTTCACGAAGAAAATGCTCAAAGATCATAGCGCGGTACATTCGTCGGAACGTCCGTTTAGGTGCCAGGTATGCGGACAGAGTTTTCCTAGAAAGCGTGCTCTGCGTGTGCACGAACAGCTTCACTCCGATGTTAAGAAGTACGTGTGCAATGTGTGCGGCAAGGCATTTGCACAATGCGCAGGACTCTATTCGCATAAGAAATCGCATAGTAGTATTAAATACCAAATTTCCGGTTAA
- Protein Sequence
- MDQTIVKEEWMEDEPERSIELDESPGNLQVSVDPTVKCGEIFVRGRNRRFTFICAICSNPFESLGSFGQHVDFHIENDKTLPAECIQKDPLTDPLLFPRLTLIQENEPPIELVDVKREEDYGIEIIDEHFEKPASDQNFVQNKNLDKSSSESRKFPCLKCGRTYKHRQSLQTHAKREHAEKLPCRLCGGTYWNLNALRFHEKTDHGLWDPSQQTTTANLLKLSQCDSGINDDETELIPSCESNNAEPPAIMKFEGKDSVDREKIDCPRCEGTFDSRRSLLIHVRCEHGVAILDAFFNDCAEMKFPCKLCDRSFLHFDSLEFHEKNEHWMENLDEDSNTTEPNAEGEGKFSCMFCNRTYSHMRNLRRHVKIDHGDGLVNGDELTCRYCDKIFPAKTEYNIHVENDHPGTNKFPCPHCPKFFKSATNLTDHVYTHTGERPFKCNDCGKGFANQSNLNVHIRMHKRIKNHTCTFCPKSFVTSTEKKRHEQIHTGERPHQCEECGSRYPCLAKLKEHLDRHRNIKNYKCDICEKQFFTKKMLKDHSAVHSSERPFRCQVCGQSFPRKRALRVHEQLHSDVKKYVCNVCGKAFAQCAGLYSHKKSHSSIKYQISG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -