Basic Information

Insect: Chloromyia formosa
Gene Symbol: -
Assembly: GCA_964017055.1
Location: OZ024813.1:161028444-161030117[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00012 0.012 17.2 0.7 1 23 187 209 187 209 0.98

2 10 4.5e-06 0.00046 21.7 0.2 3 23 216 236 215 236 0.97

3 10 8.1e-05 0.0084 17.7 8.0 1 23 241 264 241 264 0.97

4 10 0.00016 0.016 16.8 0.4 1 23 270 292 270 292 0.97

5 10 0.00011 0.011 17.3 1.8 1 23 298 320 298 321 0.95

6 10 0.16 17 7.3 1.4 1 23 338 360 338 360 0.90

7 10 8.8e-05 0.0091 17.6 2.5 1 23 366 388 366 388 0.98

8 10 3.4e-06 0.00035 22.0 1.1 1 23 394 417 394 417 0.97

9 10 8.3e-07 8.6e-05 24.0 0.4 1 23 425 447 425 447 0.97

10 10 0.0015 0.16 13.7 0.7 1 23 453 476 453 476 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00012	0.012	17.2	0.7	1	23	187	209	187	209	0.98
2	10	4.5e-06	0.00046	21.7	0.2	3	23	216	236	215	236	0.97
3	10	8.1e-05	0.0084	17.7	8.0	1	23	241	264	241	264	0.97
4	10	0.00016	0.016	16.8	0.4	1	23	270	292	270	292	0.97
5	10	0.00011	0.011	17.3	1.8	1	23	298	320	298	321	0.95
6	10	0.16	17	7.3	1.4	1	23	338	360	338	360	0.90
7	10	8.8e-05	0.0091	17.6	2.5	1	23	366	388	366	388	0.98
8	10	3.4e-06	0.00035	22.0	1.1	1	23	394	417	394	417	0.97
9	10	8.3e-07	8.6e-05	24.0	0.4	1	23	425	447	425	447	0.97
10	10	0.0015	0.16	13.7	0.7	1	23	453	476	453	476	0.97

Sequence Information

Coding Sequence: ATGGCATTCGAGTTTGTAGTGCAATGTCAGAAAACGGATAAGATTCTGCGAGAAAACCCGCAGAAGCCTTTCGTCGACTCATACGAGGAAAACGTATCTGTGAAAAGTGAGACTATCGACGAAGGCATGTCTCGTCAAGAAGCGCTGCGAAAAACTCCCGACGACTCTAACGATGACAAGGTATCTGTGAAAGTTGAGCCCATCGAACAAATTATCGTTGAGTCGGTTTCGGATCAGGCTAGTACAAATATCTTTGTCATAGAGGATTATCCGGGAGACGATGGAATAAAAGAAGAATTCATAGATGACACAGAGTTTGATGAGAACGATATTATAGAGGTAGACGAAGATTTCGTTGATGAAACTTCAGACATCGTTTTCTCTATACACGTTGACGAATATAACAAAGAAGTAACGTCTCAAGATACAATCCTGACATTGGAGCCTGACATTGTTCAGTCGGTCGCGATATCGTCAACGTACATAACATCTAATCGGGTGCCCGCAACTTCCAAAGTAAAAACCAAGAAGCAGCCACGAACCAAAGAGAATAAAACGTACATTTGCCCCGTTTGTTCTGCCACATTCGCCGATCATTCTGAATTTATCATGCACAAGAAGACACACTACCCATATCGTTCCGCATGTAAAATTTGTGGTAAACAGTTTATTAAGAGTAGCGGACTGCAAACTCATATGGACGTACACAATGGGatcaaattttcatgtcatctGTGCGATAAGCAATGTTCGACCCGTGCCAACTTAACACGACACATAAGACAATGCCATGATAAAATCCGACCGTATTCCTGTAAAGTGTGTGGGAGGCAGTTTTCCCAGAGGACGACACTGGATGGCCACGCCGCGACTCATACCGAAGAACGCAATTTCGCCTGCGATATGTGCGGCAAGACGTATAAATCTGTCTTCGTCCTAAATGCTCACAAGCGAACGCATCATCCTAATTTCGTCAGAACAAAGAAAGTAAAATACGATAAGcgaaataaatatgtatgtgaGCAGTGTGGCAAAGTATCTAATTCACTTGTATATCATAAATTGCATACGAAACTGCACTCAGacgtgaaaaaatttgaatgtGAAGTGTGTCACAAGCAATTCCACTTGAAAGTGTGGTTAAACGTTCACATGCGCATTCACACGGACGAGAGACCTTACATTTGTGAAATATGCGGAAAGGCCTTTCGCCAAGTCAACCACTTGAAATATCACAAACGTGTTATTCATGAACCGGAAGCCGCCAGACAGTTCGCATGTAAGTTTTGCGGAAAGAGTTTTACAAGTGCCGGTACACTAAGAGTTCACGAGCGAATTCATACGGGCGAAAAACCGTACAAATGTGACGACTGTCTGGCGTGCTTCATTGATATAAATGGATTAAAGCGGCATCGTGCGAAAGTTCATTCGATGGAATCATCGAAGCACAATTCGATAATGATTGAGGAATATATTGTCTGTAACGAGGATACGCCTGAGATTGATGGAAATAAAgaatga
Protein Sequence: MAFEFVVQCQKTDKILRENPQKPFVDSYEENVSVKSETIDEGMSRQEALRKTPDDSNDDKVSVKVEPIEQIIVESVSDQASTNIFVIEDYPGDDGIKEEFIDDTEFDENDIIEVDEDFVDETSDIVFSIHVDEYNKEVTSQDTILTLEPDIVQSVAISSTYITSNRVPATSKVKTKKQPRTKENKTYICPVCSATFADHSEFIMHKKTHYPYRSACKICGKQFIKSSGLQTHMDVHNGIKFSCHLCDKQCSTRANLTRHIRQCHDKIRPYSCKVCGRQFSQRTTLDGHAATHTEERNFACDMCGKTYKSVFVLNAHKRTHHPNFVRTKKVKYDKRNKYVCEQCGKVSNSLVYHKLHTKLHSDVKKFECEVCHKQFHLKVWLNVHMRIHTDERPYICEICGKAFRQVNHLKYHKRVIHEPEAARQFACKFCGKSFTSAGTLRVHERIHTGEKPYKCDDCLACFIDINGLKRHRAKVHSMESSKHNSIMIEEYIVCNEDTPEIDGNKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -