Cfor029346.1
Basic Information
- Insect
- Chloromyia formosa
- Gene Symbol
- -
- Assembly
- GCA_964017055.1
- Location
- OZ024817.1:8792341-8804183[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0029 0.3 12.8 0.4 2 23 156 178 155 178 0.94 2 14 0.00061 0.063 14.9 2.3 2 21 183 202 182 204 0.89 3 14 2.4e-05 0.0025 19.4 0.6 1 23 209 231 209 231 0.98 4 14 1.5 1.5e+02 4.3 0.1 2 23 238 260 237 260 0.92 5 14 0.00095 0.098 14.3 0.2 1 23 268 290 268 290 0.98 6 14 5.3e-05 0.0055 18.3 2.6 1 23 297 319 297 319 0.97 7 14 0.0019 0.2 13.4 0.3 2 23 564 586 564 586 0.96 8 14 5.7e-05 0.0059 18.2 1.0 1 23 590 612 590 612 0.98 9 14 1.7e-05 0.0018 19.8 0.7 1 23 617 639 617 639 0.97 10 14 0.059 6.1 8.7 0.7 1 20 645 664 645 668 0.90 11 14 0.0054 0.56 12.0 0.7 1 23 676 698 676 698 0.98 12 14 1.1e-05 0.0012 20.4 3.1 1 23 705 727 705 727 0.97 13 14 1e-05 0.0011 20.5 1.5 1 23 733 755 733 755 0.96 14 14 0.00071 0.073 14.7 1.4 1 23 761 783 761 783 0.97
Sequence Information
- Coding Sequence
- ATGAAATGTGAAAATTCCGAGGCAGTTTTAAATCGTTACTTGCAAGACTATTGCACGAAAATGGTGGAGAGCGCGGACAATGGAGATGAAAAAGAGGACACAACCACGCCGACTGCTGAATCGTCGTCTGTTAAAAAAGAGTCAccggaggaggaggaggatgatgatgatgttgtgtGTCTGTCGGACGACGACGAGGGCGATGGCGGCGGTGGCGGCAACCACTCCGGCTCGCAGGCAAACAATCAAACTGGAGATAACTACGTTGAGCTTATAGAGACTGCCATTGAACCGGAACAAATCGAAATTTCCAGCGACGAGGAGGACGACGATCAGAATTTTGATAGTGGCTATGCCATGGATGAGGACTCGTATCAGGAGAATTCCGAGAATGTATCAAACTCACAGTCGCCATTCGCTATTCAAGATTACTATAGTCTTCAGGGATTCGACTCGGAATATGTGACTTGCTCGGTTTGCTCGCAACTGTTCCCCACCACAACCGATCTGAAGCGACACATCAAAGACAGCCATACAGACGGATTGACTTGTAACATATGCCAAAGAGAGTTTTCCAGTTCGAGTAACCTGTTTGAACACTGCTCCGTTCACATACCCGTTTGCTATCCCTGCCCGATATGCGGCTACAAACTTAAACAGGAGAAATACCTGAAGAAACATTTGGAGCGACACAGTCGCGATAAAGAGGTCAAATGTGATTTGTGCGATCAACTGTTTCTCACGTCGGCCGAAATGCGAGTGCACGTGCTGCTCAATCATACGGAGGAGATCGATTCAACGTACAAGTGTCGCACGTGCGGTCTAAAATTGCCCAATGCCAGCTTATTACAATCGCATGTGGAAAAGCACAATATGGTTGTACGCAATCATGTTTGCGATGTTTGCTCTAAAGCGTTTCGTAGCAAAACCAAATTGACGGAACACTATCGCCTACATACGGGCGAAAAGCCATACATATCCGCCAATGACTGTCTACCGGAGAAAATCTGCTACTCTTGCGTGGATGAAATCGAACGTGCGTACAATTTCAAATTGCGCTGTGAAAGTTCCGAATTTACACTCTACCGCTACTTGAATCAAAACTACAGTCGAATCCAGAAAAAATTGAATGCCTTAAATTACCAAAATGCTGACATACCATACTTACCGCCCGACATATCGATCACGATCGATACGAACGAGAAAGGACAGGAGCTGGAATATCAGGTTGGCGATAGGCCGCGCCAATCGATGAAAAATGACAAAGAACAAAAGAGTCCCAGAAGTAGCGCGTACAATAACGAAGATGTGGTTTGTTTGTCCGATgacgacgacaacaacaacgagGATGACTATGAGGATCCGGACATTGACATGGACTGCGAAGACAATAGCGCAGGAAGTCCATCCAATATTAGTCACATACAAAATGGCTCGTACGAAATAGAGATCTCGGATGATGAGGAGCAGGATAATCAAATGAACAACGGCAGTCATGACGGCGATTACAAGGAAAATATCGAAGCCTATGCAAACGGGGGGTATCATGTGTTGGACTATGACAGTATTAAGAAGCTCAATCACAGCGGCAACAACGTGAACGACTCGTATCAGGCATTTTTGAACCAGGATAGTAGCAACGACTACAGTTCACAGTATGAAATATCGGATGCTGAGTCGGGATCACGAGAATGTCCAAAGTGTACGCAATTGTTTGAATCTGTCGGCGAGTTGAAGAAGCATATTCGGGAGAAGCATACACGCGGTTTTGAATGCAACATATGCAAACGAGTCCTCAAAtcgcatgccagtctcacggcTCACATAACCACTCACGTGCCTCAATTCTACCCGTGTCCAATTTGCGGCTTCAAGGTGAAACAACGCAAATATCTCACCAAACACATGGAGCAGCATAACGGCTCGAGAACGTACAAGTGCGAGTTGTGCGATGATCATTTTGCCAACATGACTGATTTGCGTGCTCACAATTTTCTGGCGCATGCTGTCGAGAAGGACTCGCCGTTCAAGTGTCATGTGTGCGGTATTCGTATGCCCAATGAGAAGGGTCTGAAAACACACCTGGCCAAACACAATCAGGTCGTACGCAATCATGTTTGCGATGTGTGCCATAAGGCGTTCCGTGACAAGACCGGCTTGAATACCCACTATCGAGTGCACACCGGCGAGAAACCGCACACATGTCCGTATTGCCAGCGCGGCTTCACCACTCAGTACAGTCTGAAAATGCATGTTGCCATACACACTAACGAGGAATTCCATAAATGTGCTATATGCCTGCAAACGTTCCGCTATCGAAGCGCGATGATCAAACATATGGAGGAGCATCGCAAAGATTAA
- Protein Sequence
- MKCENSEAVLNRYLQDYCTKMVESADNGDEKEDTTTPTAESSSVKKESPEEEEDDDDVVCLSDDDEGDGGGGGNHSGSQANNQTGDNYVELIETAIEPEQIEISSDEEDDDQNFDSGYAMDEDSYQENSENVSNSQSPFAIQDYYSLQGFDSEYVTCSVCSQLFPTTTDLKRHIKDSHTDGLTCNICQREFSSSSNLFEHCSVHIPVCYPCPICGYKLKQEKYLKKHLERHSRDKEVKCDLCDQLFLTSAEMRVHVLLNHTEEIDSTYKCRTCGLKLPNASLLQSHVEKHNMVVRNHVCDVCSKAFRSKTKLTEHYRLHTGEKPYISANDCLPEKICYSCVDEIERAYNFKLRCESSEFTLYRYLNQNYSRIQKKLNALNYQNADIPYLPPDISITIDTNEKGQELEYQVGDRPRQSMKNDKEQKSPRSSAYNNEDVVCLSDDDDNNNEDDYEDPDIDMDCEDNSAGSPSNISHIQNGSYEIEISDDEEQDNQMNNGSHDGDYKENIEAYANGGYHVLDYDSIKKLNHSGNNVNDSYQAFLNQDSSNDYSSQYEISDAESGSRECPKCTQLFESVGELKKHIREKHTRGFECNICKRVLKSHASLTAHITTHVPQFYPCPICGFKVKQRKYLTKHMEQHNGSRTYKCELCDDHFANMTDLRAHNFLAHAVEKDSPFKCHVCGIRMPNEKGLKTHLAKHNQVVRNHVCDVCHKAFRDKTGLNTHYRVHTGEKPHTCPYCQRGFTTQYSLKMHVAIHTNEEFHKCAICLQTFRYRSAMIKHMEEHRKD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -