Basic Information

Insect: Chloromyia formosa
Gene Symbol: -
Assembly: GCA_964017055.1
Location: OZ024817.1:39499198-39527778[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.4 42 6.1 0.4 3 20 222 239 222 241 0.95

2 12 0.00022 0.023 16.3 2.0 2 23 276 298 275 298 0.96

3 12 0.00094 0.097 14.3 0.3 1 21 364 384 364 385 0.95

4 12 0.00021 0.022 16.4 0.2 1 23 393 415 393 415 0.97

5 12 5.8e-05 0.006 18.2 2.8 1 23 419 442 419 442 0.95

6 12 0.0016 0.17 13.6 1.5 1 23 447 469 447 469 0.95

7 12 1.5e-06 0.00016 23.1 0.6 1 23 475 497 475 497 0.95

8 12 3.6e-07 3.7e-05 25.1 0.2 1 23 503 525 503 525 0.99

9 12 9.1e-06 0.00094 20.7 2.0 1 23 531 553 531 553 0.98

10 12 0.026 2.7 9.8 0.2 1 23 559 581 559 581 0.97

11 12 0.00018 0.019 16.6 4.3 1 23 587 609 587 609 0.99

12 12 8.2e-07 8.5e-05 24.0 0.5 1 23 615 637 615 637 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.4	42	6.1	0.4	3	20	222	239	222	241	0.95
2	12	0.00022	0.023	16.3	2.0	2	23	276	298	275	298	0.96
3	12	0.00094	0.097	14.3	0.3	1	21	364	384	364	385	0.95
4	12	0.00021	0.022	16.4	0.2	1	23	393	415	393	415	0.97
5	12	5.8e-05	0.006	18.2	2.8	1	23	419	442	419	442	0.95
6	12	0.0016	0.17	13.6	1.5	1	23	447	469	447	469	0.95
7	12	1.5e-06	0.00016	23.1	0.6	1	23	475	497	475	497	0.95
8	12	3.6e-07	3.7e-05	25.1	0.2	1	23	503	525	503	525	0.99
9	12	9.1e-06	0.00094	20.7	2.0	1	23	531	553	531	553	0.98
10	12	0.026	2.7	9.8	0.2	1	23	559	581	559	581	0.97
11	12	0.00018	0.019	16.6	4.3	1	23	587	609	587	609	0.99
12	12	8.2e-07	8.5e-05	24.0	0.5	1	23	615	637	615	637	0.98

Sequence Information

Coding Sequence: ATGGAAATATCGTTGCAACAAATGTGCCGAACGTGTTTGGGGTCCGGCCTGGCGTTGATATCGTTGCATTCCACTTCCGCGCAAACTTGTACAGTCGGACAAATGTTGGGCAATATTTCGAATATTCAGGTGTCTGAAACCGATAAACTTCCGACCAAAGTATGTCTGAGCTGCGTCAGTGAAATAAAGCGTTGCTATTTCTTTAAAATTAAATGCGAAAGCTCACAAGACACCCTCCAGCAGTATCTACGAGAAATTGAAGTTGACGATGGCATTGAAGCGGAAAATGTATCAGTTAAACCTGAAAAATTACAACAAACCATAATATTCGAAACCAATACAGTTACCGAATCGGCTAAAAAGAATGACGCAGACCATGAGCAGCCAGAAAAACCAAAGCCAACACATTCCCCAACACCAGATATGCATGAAATCATTACAAATGAAATATACGAAGAAGAGAACGACGAAGAAGACGAAGTTGAAATAGATCAGGATAATCATCAAATGGAAGACGCCATCGAGGAAGACGATGAAGAAAATGAGCCTACTACCATCGAAGTAACTCAGAACGTTGAATCGTCGAGTTACTTACTGAAAGTAAGCGAAGTAAGTATTAGCGACGCCGATACTAATACGGACGAAAAGCTGATTCTAATAGGATGCGAAGAATGCTGTCGAGCATTCGAAACTCAAGAAGACTTTCAAGCACACACCGCTAACTGTGGCTCAAGGTCAATGAACAAAGACGAGGAGCAATCGGAGGACGATGATGTTACCGTATCTAAGTCTCATAAAAAGAAGAATAAAAAGTCGAGTCCCAAAAAGTGTCCGAATTGCCCCATGGAATTCGTTCATCAGAAAAATCTTGACAAGCATATATCAAAGTTTCATTCTCCAGCGGATGACGACGCTGACCCACTTGCGCCTATGAAATTGCACACGCATAGCAATGTGAAGGTGGAACAGATTGTCAAGGAGGAAAATGAAGAGGACGAGGATGATGCCTACTGCGATGTTGATATGCCGGATAGTGTGCCCGAAGATTCAATTTTAAAACCTTCTTTATCATTACTGTCCAGTGTTGAGCATAGGTGCAACCGGTGCGGTGCCGGTTTTGTGAATAAAACATCACTGCTAAGTCACTTGAAAATAAACAAGTGTACGGTTACTCAATTCATCTGTAAGATTTGCAGTAGAGTTTTTATTAATGACAAAAGTCTAATCGAACACATCAAAGACCACGCGAAAGCATTCAAATGCACTCAATGTACAAAAGCCTTTCCGACGTCAGACAAATTGAAGAGGCACAATTATACCACCCATGGTGACCTAAAGCATCAATGTATACAATGTGGAAGAGGTTTTACAATGTTTTCAACGCTACAGGACCATCTCCGAATTCACAGTGGCGAGAAACCATTCCTTTGtgcgatctgtggcaaaggctTTAGTCAAAAAACCAATCTTACACAGCATGTTAATCGACATAAGAACTTGAAACCGTTTAAATGTCAAGAATGCGATGTGGCGTTCGTTAGTAAAGGAGAATTGAATGCTCATATGCGCAAACACACGGGCGATCATCCATTCACCTGCGATCAGTGCAATTCATCTTTCACAACATCCAGCTCGCTGGTCAAGCACAAGCGCATTCACACCGGTGAACGGCCGTACGCTTGTGATCTGTGCCCAATGCGTTTTCTAGCTCTCGGTACACTGAAAAATCATCGACGAACCCATACAGGAGAAAAGCCATTCAAATGTACATTTTGCCCTCGAAGCTTTACTCAAAAGAGCGATTGCGCGACACATATTCGAAGCCATACGGGCGAGCGACCGTACATTTGTTCAGTATGTGGATGGGGCTTCCCGCATTCCGGCACGCTGAAGACACACATGAAAACTCACGAACGCAATCAGATATCAAAGAAGGGCGAAATCAACGATAATGAATCGAAATCAGAGCAGGAATCAATGGTGGTGGAAATGATTTCGGTCGAAGAGGATCATGGGGTTGAGGAATATTTATAa
Protein Sequence: MEISLQQMCRTCLGSGLALISLHSTSAQTCTVGQMLGNISNIQVSETDKLPTKVCLSCVSEIKRCYFFKIKCESSQDTLQQYLREIEVDDGIEAENVSVKPEKLQQTIIFETNTVTESAKKNDADHEQPEKPKPTHSPTPDMHEIITNEIYEEENDEEDEVEIDQDNHQMEDAIEEDDEENEPTTIEVTQNVESSSYLLKVSEVSISDADTNTDEKLILIGCEECCRAFETQEDFQAHTANCGSRSMNKDEEQSEDDDVTVSKSHKKKNKKSSPKKCPNCPMEFVHQKNLDKHISKFHSPADDDADPLAPMKLHTHSNVKVEQIVKEENEEDEDDAYCDVDMPDSVPEDSILKPSLSLLSSVEHRCNRCGAGFVNKTSLLSHLKINKCTVTQFICKICSRVFINDKSLIEHIKDHAKAFKCTQCTKAFPTSDKLKRHNYTTHGDLKHQCIQCGRGFTMFSTLQDHLRIHSGEKPFLCAICGKGFSQKTNLTQHVNRHKNLKPFKCQECDVAFVSKGELNAHMRKHTGDHPFTCDQCNSSFTTSSSLVKHKRIHTGERPYACDLCPMRFLALGTLKNHRRTHTGEKPFKCTFCPRSFTQKSDCATHIRSHTGERPYICSVCGWGFPHSGTLKTHMKTHERNQISKKGEINDNESKSEQESMVVEMISVEEDHGVEEYL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -