Basic Information

Insect: Chloromyia formosa
Gene Symbol: -
Assembly: GCA_964017055.1
Location: OZ024816.1:103497983-103506538[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.48 50 5.8 3.1 2 23 501 522 501 522 0.96

2 16 0.0019 0.19 13.4 0.4 1 23 528 550 528 550 0.98

3 16 0.0078 0.81 11.5 5.2 1 23 556 578 556 578 0.98

4 16 0.006 0.62 11.8 1.8 1 23 582 604 582 604 0.96

5 16 4.2e-06 0.00043 21.8 0.9 3 23 623 643 621 643 0.97

6 16 8.8e-07 9.1e-05 23.9 4.2 1 23 649 671 649 671 0.98

7 16 0.00012 0.012 17.2 0.1 1 23 677 699 677 699 0.97

8 16 1.7e-05 0.0017 19.9 0.3 1 23 705 727 705 727 0.98

9 16 0.48 50 5.8 3.1 2 23 1359 1380 1359 1380 0.96

10 16 0.0053 0.54 12.0 1.7 1 23 1386 1408 1386 1408 0.96

11 16 0.021 2.2 10.1 2.7 1 23 1414 1436 1414 1436 0.97

12 16 0.0032 0.33 12.7 1.3 1 23 1440 1462 1440 1462 0.98

13 16 4.7e-06 0.00049 21.6 1.5 3 23 1478 1498 1476 1498 0.97

14 16 2e-06 0.0002 22.8 2.1 1 23 1504 1526 1504 1526 0.97

15 16 0.0087 0.9 11.3 0.0 1 23 1532 1554 1532 1554 0.97

16 16 1.7e-05 0.0017 19.9 0.3 1 23 1560 1582 1560 1582 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.48	50	5.8	3.1	2	23	501	522	501	522	0.96
2	16	0.0019	0.19	13.4	0.4	1	23	528	550	528	550	0.98
3	16	0.0078	0.81	11.5	5.2	1	23	556	578	556	578	0.98
4	16	0.006	0.62	11.8	1.8	1	23	582	604	582	604	0.96
5	16	4.2e-06	0.00043	21.8	0.9	3	23	623	643	621	643	0.97
6	16	8.8e-07	9.1e-05	23.9	4.2	1	23	649	671	649	671	0.98
7	16	0.00012	0.012	17.2	0.1	1	23	677	699	677	699	0.97
8	16	1.7e-05	0.0017	19.9	0.3	1	23	705	727	705	727	0.98
9	16	0.48	50	5.8	3.1	2	23	1359	1380	1359	1380	0.96
10	16	0.0053	0.54	12.0	1.7	1	23	1386	1408	1386	1408	0.96
11	16	0.021	2.2	10.1	2.7	1	23	1414	1436	1414	1436	0.97
12	16	0.0032	0.33	12.7	1.3	1	23	1440	1462	1440	1462	0.98
13	16	4.7e-06	0.00049	21.6	1.5	3	23	1478	1498	1476	1498	0.97
14	16	2e-06	0.0002	22.8	2.1	1	23	1504	1526	1504	1526	0.97
15	16	0.0087	0.9	11.3	0.0	1	23	1532	1554	1532	1554	0.97
16	16	1.7e-05	0.0017	19.9	0.3	1	23	1560	1582	1560	1582	0.98

Sequence Information

Coding Sequence: atggatgaaattttttcgattGAAAGCAGCGGGGAGCCACCTACTAAAGTTCGTCCCACGTGTTCAAGTCGAGAGAAACGATTTTTACCCAAAGAATACAGCGACAAGAAATTAGTTGAATTTCTCCTGGACGAGTATTATAAGAGACGGGAACTTTTTCTTAATCCAGAAATACGAAAAAAAGATTTGTGGTGCGAGTTGCTACACGAGATGAGGGAGGCTGGCTTTCAGGTTGAGAGTGAAGAGGCATTGAACATCAAAATGCGAAACTTGAAGAGAACCTACAATAAAAAGAAGGAAGAAATGTTAACCGGAGATTATTTGTGGTGGCCGTATTTCCATAAGATGGATGAGATTTTTTCGAGTGACGGTGGGAAATGGTTTGAAAGCAACGACGAACCACCGCCAGCCACTCAAATGGTGCGCGATAAAACTCAGTGGGATCAGGATGCCGTCGAATTTCTCCTGAACGCGTATCATCGGAGAAGGAGTCTTTTCCGTGatccacaaagaaaaaaaaaggttttatgGTTTGAGTTATTGCAAGAAATGAGGGCGGCTGGCTTTCAGGTTGAGAGTGAAGACGTACTGGCCAGTAAAATCCGGAACAtgaagaaaaaatacaaaattcttataaataaaataagcacagGAGGTGAGGCCAATTGGGTGCATTTCGACAAGGTGGCAGCAATTTTCTCGAGTGACTGCCCTTACGATTCTGTGTCCTCAGTTGAAGACAGCGAGGAAATGACATTCATCGATAAAAGTGCGACCTCTGCTACATCCAGCTACCAGGAATCACCCGCTAAAATTATGGATTCCTCGAATAATATGCCAAAGACACCATTGACCATTGCAGAACGCAAGACGAAAACATTGACCGGTACGCGCGCATCGTTAAAGAAATCGAAAATTCGCCTTGAAGAGCAGAGCTTGCGGCAGCAACTTAATATACCAACAACAACATCGACACAAGCTTTGGATGAATCAGATGAAATACTGTGCAAAAGGAACGACTTTAAATTCGAGTTCATAAATGCTGCATCACAGGCATTTGACTCTGATACTGATGTCAAAAACGAACCGATTGAATGGGAGGAAATCGACGACGATAACAATGAAAGCAATTGCGGCCAAATACGCCTGAACTTGAGCGGCAGTTTTGTTTTCGTCTGCGGATTTTGCCACGAAAAACACGACAACATGATTGATTTCGGATTACATCTGAAGAAGCGACATGGCGATCATTTAAAACAAACAATTCCTGTTGACTGTTTGGGCACTACGGCGAAAACGAAAAAGTTTGCTGAAACGGTTGATGAACTTCCTGCATTGTCTAACGACGCATCGGAAGCAGTTGATTACCTCCCACAGTTCAAATCCCAACTTCGGGAGCAAGATTTGTCGGCAAGCGAAACTGGAGCTAAACGTACCAACACAGACCATGTAAGTCGTCATAGTGAAACATTACCAATAGCATTAGATCCGTGGATTCCTCAATGTAAATACTGCAACCAGGAGTTTGAAACTAGAGATTTATGCACAGAACACGAAAGCACTCACGCCAGTGAGAATTCTTTCGTCTGTTGGTACTGTCCGGAGACGTTCCGAACTTATCAAAGTCGCATTGATCACGTACGAGTTCATACGGGTGAGCGTCCTTTCAAATGCACCGAATGTTCAAAATTTTTTGCAGAAAGAAGCAAGCTACATCTTCACTTTCGTAATCACAAAAAGCGATTCTCTTGTCGGACATGCGGCAAAGCGTTTCACACCGAAGTAGCCTTGAAGTATCACGAACAACAACACACTGCCACTGGTGCGACTGGGCGTACTGTGTACACTGGGCTCAGTTCGGTAATCTGTGAACAGTGCGGCAAAACGTTCACCTCAATGAAAAACCTTAAAATTCATCAGAATCGACACGCCGGTATCACGGATTATAAATGCGAAGAGTGCGGAAAGTGTTTCTATTCGAAGTATAATTTGAGAATGCATATGAGTTTACACACGGGCGAAATGCCGTTCGAATGTGATGTGTGCGGTAAGAAATTTGCGAAAAGACCGGGATTAACAGTTCATCTGGAATTGCATTCGGAGGAGAAGTCGCACGTTTGTAATCTTTGTGGGAAAGCATATGTTGCGAATTCGTCACTTCAGGCACATTTGAGATCACATCGTATTAATTCAAGGAGAAATCGTATTAATTCAAATcaAAAGTTCATATTTGTTTGGATTGTAGCAGAACGGCCGACATTTAAGTGGGACGACGAACCAACCGAATTTCTCCTGAGCGCGTATCATTCGAGAAGGCATCTTTTTCGTGATccgaaaatcagaaaaaaagatTTGTGGTGGGAGATACTGCGAGAAATGCATGCAAAGGGATTCCAAGTTGCGGATGAGGAAGCACTGGACAGTAAAATGCGTAACAtgaagaaaaaatacaaaattcttataaataaaacaaacacaGAAAATTATGCAAATAAACACTGTAACTGGCGGTATTTCGACAAAATGCATGAATTGTTTTCGATTGAAAGCAGCGGAGAGCCGCCTACTGATGTGCTTCGTCCCTCGTGTCGGCCGCAAGAGAAACGATTGATACCCAAAGAATACAAATGGGACGAGAAAGGCGTTGAATTTCTCCTGGACGAATATTATAAGAGACGGGAACTTTTTCTTAATccagaaataagaaaaaaagattTGTGGTACGAGTTGCTACACGAGATGAGGGAGGCTGGCTTTCAGGTTGAGAGTGAAGAGGCACTGAACATCAAAATGAGGAACTTGAAAAAAACCTACACTAGAAAGAAGGAAGAAAAATTAACCGGAGAATATTTGTGGTGGCCGTATTTCCAAAAGtgtgatgaaattttttcgagtGACGGTTTGAAATGGTTTGAAAGCAGCGACGAACCACCGCCAACCACTCAAATGATGCGCCCCCCGTGTCGAATACGAAAGAGAAAGGTGATCACCGAAGAAAGCAAGTGGAAGCAGGATGCCGTCGAATTTCTCCTGAACGCGTATCATCAGAGAAGGGATCTTTTTCGTATTGGACAAAGAAGAAAAAGGGATTTATGGTTCGAGATATTGCAAGAAATGACGGCGGCTGGCTTTCAGGTTGAGAATATAGAGGCACTGGACAGCAAGATGAGGAACATGaagaaaagatacaaaaatattaaaaatataataagcACAGAAGGACGTAAGGCTAATTGGCTGTATTTTGACAAGTTGGAAGCAATTTTCTCGAGTGACTGCCCTTACGATCCTATGTCCTCGGTTGGAGACAGCTGGGAAACGACATTCGTCGAAAAAAGTGCGTCTTGTATGGTAAGCTCTGCTCATACATCCAGCTGTCAGGAATCACCCACTAAAATTATAGATTCCTCGAATAATATGCCAAAGACACCGTTAACCATTGAAGAACGCAAGGCTAAGGTAACGGCCGACATGCGTGCAACGTTAAAGGAATCAAAAAATAGACTTGAGGAGCAAAACTTGTTGCTTCAGCAACTTAATATATCAACAACATCAACACAAACTTTGGATGCTATAAATGAAGTGCCGTGCAAAAAGAACGACTTTACATTCGAGTTCATAAATACTACGTCAGAGTCATTCGACCCTGATGCTGATATCAAGAACGAACCGATTGAGTGGGAGGAAATCGACGACGACACCCATGAAAGCAATTGCGGCCAAATACGCTTGAACTTGaccggcaattttgtttttgtctgcGGATTTTGCTACGAGAGACACGACAACATGATTGATTTCGGGTTACATCTGAAGAAGCGACATGGCGACCATTTAAAACCATTTGACTGTTTGGACACTACGGCGAAAGCGAAAACTTTTGCTGAAACAGTCGATGAACTTCCAGCATTGTCTAACGACGCATCGGAAGCTGTTGATGACCCCTCACAGCTCAAAACCGAAATTCGCGAGCACGATTTGTCGGCAAACGAAACTGAAGCTAAACATACCACCACAGACCGTGCAAGTCGCCATAGTGAAACGTTACCAATAGCATTAGATCCGTGGATTCGTCAATGTAAATACTGCAACCAAGAGTTTGAAACAAGAGATTTATGCACAGAACACGAAAGCACCCACGCCAGTGAGAATTCTTACCTCTGTTGGTACTGTCCGGAGACGTTCCGAACTTATCACAGTCGCAACGATCACGTGCGCGTCCATACGGGCGAGCGTCCTTTCAAGTGCATCGAATGTCCAAAGTCATTTGCAGAAAGAAGCAAGCTACATCTTCACTTTCGTAATCACAAAAAGCGATTCTCTTGTCGGATATGTGGCAAAGCGCTTTGCACCGAAATAGCCTTGAAGTATCACGAACGCCGACATAATTCCACTGGGCGTACTTTGTCCAGTGGCCTCAGATCGGTTATCTGTGAACAGTGCGGCAAAACGTTCAAGAATATGTACAGCCTGAAACAGCATCAGAAACGGCACGCCGGTATCTTGGATCATAAATGCGAAGAGTGCGGAAAGGGGTTCTTTTCCAAGTATAATTTGAGAGCGCATATGAGTTTACACACGGGCGAAATGCCGTTCGAGTGTGATGTGTGCAGTATGAAATTTGCGAAAAGACCGGCGCTGATAGTTCATCTAGAATTGCATTCGGAGGAGAAGTCGCACGTCTGTAATCTTTGTGGGAAAGCATATGTTGCGAATTCGTCACTTCAGGCACATTTGAGATCGCATCGTATTCATTCAAGTCTAGTACACTGA
Protein Sequence: MDEIFSIESSGEPPTKVRPTCSSREKRFLPKEYSDKKLVEFLLDEYYKRRELFLNPEIRKKDLWCELLHEMREAGFQVESEEALNIKMRNLKRTYNKKKEEMLTGDYLWWPYFHKMDEIFSSDGGKWFESNDEPPPATQMVRDKTQWDQDAVEFLLNAYHRRRSLFRDPQRKKKVLWFELLQEMRAAGFQVESEDVLASKIRNMKKKYKILINKISTGGEANWVHFDKVAAIFSSDCPYDSVSSVEDSEEMTFIDKSATSATSSYQESPAKIMDSSNNMPKTPLTIAERKTKTLTGTRASLKKSKIRLEEQSLRQQLNIPTTTSTQALDESDEILCKRNDFKFEFINAASQAFDSDTDVKNEPIEWEEIDDDNNESNCGQIRLNLSGSFVFVCGFCHEKHDNMIDFGLHLKKRHGDHLKQTIPVDCLGTTAKTKKFAETVDELPALSNDASEAVDYLPQFKSQLREQDLSASETGAKRTNTDHVSRHSETLPIALDPWIPQCKYCNQEFETRDLCTEHESTHASENSFVCWYCPETFRTYQSRIDHVRVHTGERPFKCTECSKFFAERSKLHLHFRNHKKRFSCRTCGKAFHTEVALKYHEQQHTATGATGRTVYTGLSSVICEQCGKTFTSMKNLKIHQNRHAGITDYKCEECGKCFYSKYNLRMHMSLHTGEMPFECDVCGKKFAKRPGLTVHLELHSEEKSHVCNLCGKAYVANSSLQAHLRSHRINSRRNRINSNQKFIFVWIVAERPTFKWDDEPTEFLLSAYHSRRHLFRDPKIRKKDLWWEILREMHAKGFQVADEEALDSKMRNMKKKYKILINKTNTENYANKHCNWRYFDKMHELFSIESSGEPPTDVLRPSCRPQEKRLIPKEYKWDEKGVEFLLDEYYKRRELFLNPEIRKKDLWYELLHEMREAGFQVESEEALNIKMRNLKKTYTRKKEEKLTGEYLWWPYFQKCDEIFSSDGLKWFESSDEPPPTTQMMRPPCRIRKRKVITEESKWKQDAVEFLLNAYHQRRDLFRIGQRRKRDLWFEILQEMTAAGFQVENIEALDSKMRNMKKRYKNIKNIISTEGRKANWLYFDKLEAIFSSDCPYDPMSSVGDSWETTFVEKSASCMVSSAHTSSCQESPTKIIDSSNNMPKTPLTIEERKAKVTADMRATLKESKNRLEEQNLLLQQLNISTTSTQTLDAINEVPCKKNDFTFEFINTTSESFDPDADIKNEPIEWEEIDDDTHESNCGQIRLNLTGNFVFVCGFCYERHDNMIDFGLHLKKRHGDHLKPFDCLDTTAKAKTFAETVDELPALSNDASEAVDDPSQLKTEIREHDLSANETEAKHTTTDRASRHSETLPIALDPWIRQCKYCNQEFETRDLCTEHESTHASENSYLCWYCPETFRTYHSRNDHVRVHTGERPFKCIECPKSFAERSKLHLHFRNHKKRFSCRICGKALCTEIALKYHERRHNSTGRTLSSGLRSVICEQCGKTFKNMYSLKQHQKRHAGILDHKCEECGKGFFSKYNLRAHMSLHTGEMPFECDVCSMKFAKRPALIVHLELHSEEKSHVCNLCGKAYVANSSLQAHLRSHRIHSSLVH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -