Cfor016709.1
Basic Information
- Insect
- Chloromyia formosa
- Gene Symbol
- -
- Assembly
- GCA_964017055.1
- Location
- OZ024815.1:32453400-32459639[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.094 9.7 8.1 1.3 1 23 272 295 272 295 0.89 2 13 0.00081 0.083 14.6 0.1 1 23 360 383 360 383 0.91 3 13 6.6e-05 0.0068 18.0 2.6 1 23 391 413 391 413 0.98 4 13 7.5e-05 0.0077 17.8 1.4 1 23 420 442 420 442 0.99 5 13 4.8e-06 0.0005 21.6 1.9 1 23 448 470 448 470 0.99 6 13 8.5e-05 0.0088 17.6 1.4 1 23 477 499 477 499 0.97 7 13 2e-05 0.0021 19.6 0.3 1 23 505 527 505 527 0.97 8 13 6e-05 0.0062 18.1 0.3 1 23 533 555 533 555 0.98 9 13 6.1e-06 0.00063 21.2 0.4 1 23 561 584 561 584 0.96 10 13 1.6e-05 0.0016 19.9 1.6 1 23 590 613 590 613 0.97 11 13 5.7e-05 0.0059 18.2 1.4 1 23 619 641 619 641 0.98 12 13 1.6e-05 0.0016 19.9 0.8 1 23 647 669 647 669 0.97 13 13 0.017 1.8 10.4 0.1 1 22 675 696 675 699 0.91
Sequence Information
- Coding Sequence
- ATGTTAATTTTTCTATTACAGTATAGAGCGGACGGTGTGCAAGATACGCCAATTTCGGAAGTCCTTTCGTCAATTTTGTCGTTAGATATTTTGGATTCAAATGCACATTCAAAGATTATATGCGATGAGTGCAACGAACGCCTCAACAAATACGAAGAACTGGAACAACAAATGCTTGAATTAAAGTACAAAATCATACATGACTTTAGTGCAGCGTCCCGTCCCAGTGAGAATGAGAACGAGCCCCCCTTTGAAATTGAGGAATCATTCGAGGAGGGCATTGAAGAAGAGCTCAATGAAGGGGAACCAATGAGCAGTGGTGCTGAATGTATGCTGACCGATGTCAAGCCAACAACAAATAACGAAGAGGCTTCGAACGCCGAGCTTTTATCGCTGCTATCGGAGCACAAGGACATTTCTAGTAATCTACGTCAGGAAGAAAGAATAGCGCAGACTATAATTGTGAAGCAAGAAAATCTAGATTCTGTATTGGAGACGGGCGAATATTTTGATCAGAATAACGGAAACATTGTCGAGATTATAACAGATGATAATGttgaatACAATAACGGTGTAAAGAAGGAAAAGGAACCCGATAATAAGATACACAATGCTTCACCATTGGAGGAAGCCGATATTACTGGCGACGATAGCCAAGATCCTGATCATGACGGTCAAACCTTCTTTTACTTCAATGGTCTCAAGTACATCTGCCTGATTTGTTCGGCGGAGGCACCTGGTGACGAAGCCAATGAATTCGATGACATCGACGCAATATCCAAGCACCTGAGTGAAAATCACGGCGTTTCAGCGTACTTCTGCAAAATCTGTGGTGATGAATTCGGGAGAGAGGATGATCTTAATGAACATTGTCGCGAAAAGCACGAAGAAGAGACAGCAGAAGGGCACCAAATTAATATCTATAACGTAAATACGGAAGATCGAAAAACATTCTATTCTTTCAACGGTGAAAATTTCTCCTGCCTGCTGTGTCCGGCGGACTCGGAAGTGGCCCCAATAAAGTATGCGCTGCGAACAATAACGGCACATTTTAGAGCCGTCCACAATATACGAATTTATATATGCGACATTTGTGGTACGGACTTCAAAAAACGAATGGAACTCACCGATCATGTGGACGAAGTGCATGGCGGTACAGAGGACGGCGAATACCAATGCGAAACGTGCCAAAGGGTCTTTACGAATCTTCGACAATTTCGAATTCACAAGCGCCTTCATTATAACATGAACAAATCCTATCAATGCTCGCAATGCGAAAAGAAATATAATTCGAAGAATTTGCTGGATGAGCACATGAACATGCACACTGGGCAGCGACCGTACAAATGTCAGAGGTGCACTAAAGACTTTGCATCCAAGTACACGCTTACGGCTCACATGAAAATCCATATGGATAGGCCGAGACCTTTCAACTGCAAAGAATGTAGCAAATCATTTTTCAGTGCGCAAAATTTATTGCAACACGAGAAAATTCATTCGGGAGTGAAAGAGTTTGTGTGTGGCGTATGCAATAAAGCCTTCGGCACACAACATAACTTAGAAGTCCACAAAATTGTTCACACTGGCTACAAGCCGTTCATATGCCGAACGTGCGGCAAAGCATTTGCTAGACGTGCCGAAATTAAGGATCACGAACGTACGCATACCGGCGAACGACCATTTGTTTGTGATATTTGTAATATGCCATTTGCTCAACGTTCGAATCTCACGACACATAAACGGGCGACTCATTTGAATGATAAGCGCTACAAGTGCGAGCAGTGTGATCGATCGTTTAAGCGACGACGTCTGCTAGACTACCATATTAGAGCCTCGCACACCGGCGAACGGCCCTACGTTTGCATGATGTGCAATGCTACGTTCGTCTATCCCGAGCACTATAAGAAGCATTTAAGGATTCATACTGGTGTCAAGCCGTATTCATGTGAAGTTTGTGGAAAGTCGTTTAATAGCCGTGATAACCGAAATGCGCATCGATTCGTTCACAGCGACAAGAAGCCCTATGAATGTCTGGCTTGCGGCCAAGGATTCATGCGAAAGCCTCTACTATACTCGCACATGCAACAATCAGGTCATGTTAATgatacaattattattaaccAGCCACGAATCATGGATGGTGAAAATAAAAAGTCTGGCGATGAGAAGGTTCTAATTGAAATGGTGGATGGACTGGTTGAAGAGCAGATGGTGGATGAACAAAATCAATATGGAACCAGTGCGGACGAAGATTTAGTGGCTGTCATCGACAATACCGAAGATAATTCCTTATCCAATGAAATGTTGGAAGATGATTTCAACGAAGTAATGGACACATATGTGGTTCGGTATGAAGACGACGCGGAGCAAATGCAATTTGTACAAATTAGTTAG
- Protein Sequence
- MLIFLLQYRADGVQDTPISEVLSSILSLDILDSNAHSKIICDECNERLNKYEELEQQMLELKYKIIHDFSAASRPSENENEPPFEIEESFEEGIEEELNEGEPMSSGAECMLTDVKPTTNNEEASNAELLSLLSEHKDISSNLRQEERIAQTIIVKQENLDSVLETGEYFDQNNGNIVEIITDDNVEYNNGVKKEKEPDNKIHNASPLEEADITGDDSQDPDHDGQTFFYFNGLKYICLICSAEAPGDEANEFDDIDAISKHLSENHGVSAYFCKICGDEFGREDDLNEHCREKHEEETAEGHQINIYNVNTEDRKTFYSFNGENFSCLLCPADSEVAPIKYALRTITAHFRAVHNIRIYICDICGTDFKKRMELTDHVDEVHGGTEDGEYQCETCQRVFTNLRQFRIHKRLHYNMNKSYQCSQCEKKYNSKNLLDEHMNMHTGQRPYKCQRCTKDFASKYTLTAHMKIHMDRPRPFNCKECSKSFFSAQNLLQHEKIHSGVKEFVCGVCNKAFGTQHNLEVHKIVHTGYKPFICRTCGKAFARRAEIKDHERTHTGERPFVCDICNMPFAQRSNLTTHKRATHLNDKRYKCEQCDRSFKRRRLLDYHIRASHTGERPYVCMMCNATFVYPEHYKKHLRIHTGVKPYSCEVCGKSFNSRDNRNAHRFVHSDKKPYECLACGQGFMRKPLLYSHMQQSGHVNDTIIINQPRIMDGENKKSGDEKVLIEMVDGLVEEQMVDEQNQYGTSADEDLVAVIDNTEDNSLSNEMLEDDFNEVMDTYVVRYEDDAEQMQFVQIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -