Cfor028545.1
Basic Information
- Insect
- Chloromyia formosa
- Gene Symbol
- -
- Assembly
- GCA_964017055.1
- Location
- OZ024816.1:104726921-104729848[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 8.4e-05 0.0087 17.7 0.2 1 23 132 155 132 155 0.97 2 13 3.3e-06 0.00034 22.1 6.2 1 23 208 230 208 230 0.98 3 13 0.0049 0.5 12.1 2.1 2 23 238 260 237 260 0.91 4 13 0.00013 0.013 17.1 1.0 1 23 267 290 267 290 0.95 5 13 0.00079 0.082 14.6 1.3 1 23 296 318 296 319 0.94 6 13 0.00026 0.027 16.1 5.9 1 23 326 348 326 348 0.98 7 13 6.3e-05 0.0065 18.0 1.8 1 23 360 382 360 382 0.95 8 13 5.6e-06 0.00058 21.3 0.1 2 23 388 410 387 410 0.94 9 13 6.9e-06 0.00071 21.1 0.2 1 23 419 441 419 441 0.98 10 13 7.9e-05 0.0081 17.7 4.6 1 23 447 470 447 470 0.95 11 13 7.9e-06 0.00081 20.9 2.7 1 23 480 502 480 502 0.98 12 13 6.5e-06 0.00067 21.2 3.4 1 23 508 530 508 530 0.97 13 13 2.4e-05 0.0025 19.3 1.9 1 23 537 560 537 560 0.97
Sequence Information
- Coding Sequence
- ATGGCTACGGTGGATATTAATATATCGGATTTTGATAAACTATGTCGAATGTGTTTGGGCCGTGATAAACAGATGAAATGCTTGTTTGTAGATGAAATGGAAAATATCAGAAGCATGATAGACGATTTCATAATTTATGCGATTTCAGAGAGTGACAATTTCCCCAGCAACATATGCTTGGAATGCATTGATCAGGTTCGCGCTATATGTGATTTCAAAAATCAATGTGAACGTTCCTTCGAGATGCTCGCCTCTATCGTTGAAATATACGAAACGGGTCATGTTATCCTCAACAAACAAGGTGGAAGTGTGAAAGACGAAAATATTGCCATTCTGCCTATTAAAACCGAAGATACATCAGAGTTTATTGAAACCATTTCCAATGACGGCGAATTCGATTGTACAGATTGCGTCATGTCATTTTCCCAAGAGGTTGAACTTTTCAAACATATTTCGACGGTGCATGAAAAAATAGAAGAGAAGCCACCAACGTCTTATGAAAGCCATGATTCGCCCCGACAAGTGAAGTCCTGCGAAAACAAAACGAACGAAGAATATCCTTCGGACCAGACAGATGATAAACAGTCCAAGACTAAAAAGGTTGGCCGACCGAGAAAGCTCCATAAATGCAATATGTGCAACAAGTCCTTTAAACGTCCGTCACATTTGACACTCCACAAAATAACGCATATGAAACAGAAGCCAGTCGTTCCGTGCAATGCTTGCGGCAAACGTTTCACGGGTGTCGATTATTTGCGAAGGCATCGAGCTCATTGTCATAAGCAGGCGAGAAGTTACCATGTATGTGACATTTGCAATAAATCGTTAACCAGTGCGGAAGGTTTGAATCGTCACAAACTAAGGCGGCATTCGGATAAAAAGCCGTTCGTATGCATGGTGTGCAATAGAAGATTTCCGGAGAGAGCACTGTTAACGAAGCATCAAGTGTATCATCATTCGCCATCAATAATGCGGCATACATGCAATTATTGTAATGAAGGTTTCAAATTCTCAACAGAACTGCAAAAACACCACCTGACACATGTGGAACATTTTAACGAGAAAGAAGAAAAGTCATTTGTGTGCAAGATTTGCAATAAAGTTTACTCGCGCGCCGATCGTTTAAGGCATCATGAATTTGTGCATAATGGTAAGAAAATTCCTTGTCCTCAATGTGGTATTGGCTTTTCACGTCCCGATTATTTAAGGCGACACCAAGTTAAATACCACGAGAAAAAAGCCTCGGTTAAGGTTTATAAATGTGATATTTGCAATAAAGTTTTAGCCAATCGGGCAAATTTACGACAACACGAAATCACACATTTGGAAGAGAAACAATTTGAATGCAAGATTTGCATCAAACGTTTTTCACGTGCCTCACATTTAAGGAGGCATCAATCCCATGTTCATGAGAACGCTTCGGCAACGAAAAAGTATCATAAATGTGACGTTTGTAGCAAGTCTTTCGAATATCCGTCATATTTAAAGCAGCACCAATTGAGTCATTCGACAGAGAAGCCATTCAACTGCAAAATATGCAATAAAGGTTTTTCAACGGCCGAACATTTCAGGAGGCATCAATATGTTCATGATCCGCCGAAAGAGCACCATCAATGTGATGTTTGTAGTAAATCATTCACGCTTCGGGTCAATTTAGCGCGTCACGTGAAGAGGTCCCATTCGAACCGTAAATATTGTCCGGGAACAATTGATTCAAAACAGGACTTGGCGAACCATAAAAGCGACACAATTGATGCACAGTCGGACATTGAACGCGATAAGACATCGTTTAATCAAAACGAGCAGCAACACAAATCGGAAGTCATGCAGAATCGGTCCAAGATAACGGAAGAAGAGATAGCCGATGAATGTTTGCAAATCGCAATTAAAGAGGAAGACTATCATTTGACATAA
- Protein Sequence
- MATVDINISDFDKLCRMCLGRDKQMKCLFVDEMENIRSMIDDFIIYAISESDNFPSNICLECIDQVRAICDFKNQCERSFEMLASIVEIYETGHVILNKQGGSVKDENIAILPIKTEDTSEFIETISNDGEFDCTDCVMSFSQEVELFKHISTVHEKIEEKPPTSYESHDSPRQVKSCENKTNEEYPSDQTDDKQSKTKKVGRPRKLHKCNMCNKSFKRPSHLTLHKITHMKQKPVVPCNACGKRFTGVDYLRRHRAHCHKQARSYHVCDICNKSLTSAEGLNRHKLRRHSDKKPFVCMVCNRRFPERALLTKHQVYHHSPSIMRHTCNYCNEGFKFSTELQKHHLTHVEHFNEKEEKSFVCKICNKVYSRADRLRHHEFVHNGKKIPCPQCGIGFSRPDYLRRHQVKYHEKKASVKVYKCDICNKVLANRANLRQHEITHLEEKQFECKICIKRFSRASHLRRHQSHVHENASATKKYHKCDVCSKSFEYPSYLKQHQLSHSTEKPFNCKICNKGFSTAEHFRRHQYVHDPPKEHHQCDVCSKSFTLRVNLARHVKRSHSNRKYCPGTIDSKQDLANHKSDTIDAQSDIERDKTSFNQNEQQHKSEVMQNRSKITEEEIADECLQIAIKEEDYHLT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -