Basic Information

Insect: Chloromyia formosa
Gene Symbol: -
Assembly: GCA_964017055.1
Location: OZ024813.1:147063744-147085340[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 6.2 6.4e+02 2.3 0.3 7 23 187 203 187 203 0.96

2 19 8.3e-06 0.00086 20.8 0.4 3 23 211 231 209 231 0.97

3 19 1.1e-05 0.0011 20.4 2.1 2 23 237 258 236 258 0.97

4 19 1.9e-05 0.002 19.7 2.0 1 23 264 286 264 286 0.98

5 19 0.0011 0.12 14.1 2.5 1 23 292 314 292 314 0.98

6 19 0.004 0.41 12.4 1.4 2 23 491 513 490 513 0.95

7 19 0.00062 0.065 14.9 2.7 3 23 522 542 521 542 0.98

8 19 0.00018 0.019 16.6 1.0 2 23 550 571 549 571 0.98

9 19 1.3e-06 0.00013 23.4 0.3 1 23 577 599 577 599 0.97

10 19 1e-05 0.001 20.6 2.1 2 23 605 626 604 626 0.97

11 19 4.9e-05 0.0051 18.4 2.8 1 23 632 654 632 654 0.98

12 19 2.5e-05 0.0026 19.3 5.9 1 23 660 682 660 682 0.98

13 19 5.8 6e+02 2.4 0.2 1 8 686 693 686 699 0.84

14 19 2.1 2.1e+02 3.8 0.8 7 23 858 874 858 874 0.96

15 19 1.6e-05 0.0016 19.9 0.3 1 23 880 902 880 902 0.97

16 19 1e-05 0.001 20.6 2.1 2 23 908 929 907 929 0.97

17 19 4.9e-05 0.0051 18.4 2.8 1 23 935 957 935 957 0.98

18 19 0.00038 0.039 15.6 6.1 1 23 963 985 963 985 0.97

19 19 0.23 23 6.9 0.4 1 23 989 1012 989 1012 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	6.2	6.4e+02	2.3	0.3	7	23	187	203	187	203	0.96
2	19	8.3e-06	0.00086	20.8	0.4	3	23	211	231	209	231	0.97
3	19	1.1e-05	0.0011	20.4	2.1	2	23	237	258	236	258	0.97
4	19	1.9e-05	0.002	19.7	2.0	1	23	264	286	264	286	0.98
5	19	0.0011	0.12	14.1	2.5	1	23	292	314	292	314	0.98
6	19	0.004	0.41	12.4	1.4	2	23	491	513	490	513	0.95
7	19	0.00062	0.065	14.9	2.7	3	23	522	542	521	542	0.98
8	19	0.00018	0.019	16.6	1.0	2	23	550	571	549	571	0.98
9	19	1.3e-06	0.00013	23.4	0.3	1	23	577	599	577	599	0.97
10	19	1e-05	0.001	20.6	2.1	2	23	605	626	604	626	0.97
11	19	4.9e-05	0.0051	18.4	2.8	1	23	632	654	632	654	0.98
12	19	2.5e-05	0.0026	19.3	5.9	1	23	660	682	660	682	0.98
13	19	5.8	6e+02	2.4	0.2	1	8	686	693	686	699	0.84
14	19	2.1	2.1e+02	3.8	0.8	7	23	858	874	858	874	0.96
15	19	1.6e-05	0.0016	19.9	0.3	1	23	880	902	880	902	0.97
16	19	1e-05	0.001	20.6	2.1	2	23	908	929	907	929	0.97
17	19	4.9e-05	0.0051	18.4	2.8	1	23	935	957	935	957	0.98
18	19	0.00038	0.039	15.6	6.1	1	23	963	985	963	985	0.97
19	19	0.23	23	6.9	0.4	1	23	989	1012	989	1012	0.94

Sequence Information

Coding Sequence: ATGTACGATCCGAAGAATATTTGTCGATCCTGTTTAGCCGTAGACGTGAAATTGTTTCCGCTGAACGCTATAGTGGAGTCCGGTACTCGACTTGATGAGTGTTTCCGGGCACACATGAATGTTAAAATTAGCGAAGACGATGGTCTTCCTTACAATATTTGTGTAGAATGTTTGGATAAGATGGCGAAGTTTAGGAAATTTTATTGGCGTTACTTAAAATCCGAAGCGTATCTATTGGAACTGTGCATGAAATCAAGTTTTCAACGTTTAGAACCGGATGAAGCGGAAGCTCCGGTAAATGACGAAAGTAAGGTGGATGTTGAAGAACTGGTCTGCGATGAAACAGGTGTCTGCGACGAGGAACTGTTGGACGACAGCACTATAGTATCCACAAAAGTGGAAGAAGTGCCAGTGGAAGAATCTCTAGCAGACACATTCGATTGGAACCAAGTGGAGTTCACTGAAAGTGATAAACAGGATGCAACATCTGTTAATTCTACAAACAATTCAAGCGATGGAAACTTGATTCAAATAATGAAAACCCTCTTATCCATAATAGATAAAACCTTTCAAGACAGAAGCAAAATGACGCCCCACCTACGAACACATACAGGAGAGAAGCCCTATGGATGCACCATATGCGGTCGTGCATTTAGACAGCGTTCAGCGATGCTTACACATATGCGATTGCACACGGGCAAAACTATAAGCTGCCCCAAGTGTGATAAGAAATTTTGTCGTAAAGGATTTCTGGACATTCACATGAGAGTGCATGACGATATACGACCGTACGCGTGCACTTTGTGCGATAAGAAATATCGAATTAAAAGTCATTTGTCGGCACACATGCTAACCCATTCGGATGTTCGATCTTTTAGCTGTCATGTTTGCGGTAAATTGTTTAAGGGAAAATGCGCTCTCAATGGTCACCTGAACATTCACATTAAACCGTACAACTGTCCAATGTGTCCGCTGAAGGCAGCAATTGAAGATGTCGAACTTATTCCGTTGAACGTTATAGTGGAGCCCGGTACTCGAATCGATGAGTGTTTCCGGTGGCTCATGAATGTTGAAATTAGCGAAGGCGATGGTCTTCCCTACAATATTTGCGTGGAATGTTTGGATAAGGTGGTGGAGTTTAGAAAATTTTATTTGCGCTACATGAAATCTGAAGCGTATTTATTGGAACTGTACATGAATTCAAAGACGGAGACGGAGGAGCCTGAAGCTTCGGGAAATGACGAAATCAGCCACACGCAGCTGGAGGAAGAGATCACTATAGAAGATACCAAAGTTGAGCCAGAGGAATATCTAGAATCAGACACACTGGATTATGATGAGGAGGTATCTAGTGATGAAGTGGAGTCCACTGAAAATGATAAACTGGATTTAACATCTGTTACTGATACAAGCAATTCAGGCGATGGAACAAAAAAATGTCGGCCCCGCAAAAAACAGCCCAAGTTGATATATTGTCTGCAGTGCCATGAAAAATATCCAACGAGAAGTGAGTTGCGTGAACATTTTAATACAGAACACGGAGAGGACAATGCAAAGGGCTTTTGCACTCAGTGCTCCAAAACCTTCCCATCTAGAGGCAAATTAATGGCACACTTACACACTCATAGACATCCCGCCACACTCGTTAAATGTATGTATTGTGATAAAACCTTTCAAGACAGAAGCAAATTGGCGCCCCACCAACGAACGCATACCGGCGAGAAGCCCTATGCGTGTACAATATGCGGTCGTGCGTTTAGTCAGCGTTCAGTTCTTAATACACATATGAAATTGCATACGGGTAAAACTGTAAGCTGTCCCAAGTGTGATAAGAAATTCTGTCGTAAAGGATTTCTGGATGTTCATATGAGAGTGCATGAAGATATACGACCGTACGCGTGCACTTTGTGCGATAAGAAATATCGAATTAAAAGTCATTTGTCGTCACACATGCTAACACATTCGGATGTTCGATCTTTTAGCTGCCATGTTTGCGGTAAATCGTTTAAGGTGAAATGCACTCTCACTAGTCATTTGAACACTCACACTAAACCGTACAAGTGTCCTAAGTGTCCGTTGAAGGCAACAaACGTCGAGCTTATTCCGTTAGATGCTATAGTGGAGCCCGGTACTCGAATCGATGAGTGTTTCCGGTTGCATATGAATGTTGAAATTAGCGAAGGCGATGGGCTTCCCTACAATATTTGTGTGGAATGTTTGGATAAGATGGTGGAGTTTAGACAATTTTATTTACGCTACATGAAATCTGAAGCGTATTTATTAGAACTGTACATGAATTCGAATTGTCAACATTTATTAGAGACAGAGGAGGTCGAAGCTTCAGGAAGTGACGACTGCAAGGCGGATATTGAATTGCTCGTCGATGAAACAGTCAGCGACAGAGAATTGGAGGAAGACATCACTATAGTAGACACCAAAGTTGAGCCAGTGGAATATCTAGAATCAGATACACTGGATTATGATGAGGAGGCGTCTAGTGCTGAAGTGGAGTTCATTGAAAATGATAAACTGGATGTAATATCTGTTAGTGGTACAAGTAATTCAGGCGATGATAAAACCTTTCACGACAGAAGTAAATTGGCGCCCCACCAACGAACGCATACTGGCGAGAAGCCCTATGCGTGTACCATATGCGGTCGTGCGTTTAGCCAGCGTTCAATTCTTAATACACATATGCAATTGCACACGGGTAAAACTGTAAGCTGTCCCAAGTGTGATAAGAAATTCTGTCGTAAAGGATTTCTGGATGTTCACATGAGAGTGCATGACGATATACGACCGTACGCGTGCACTTTGTGCGATAAGAAATATCGAATTAAAAGTCATTTGTCGTCACACATGCTAACACATTCGGATGTTCGATCTTTTAGCTGCCATGTTTGCGGTAAATCGTTTAAGGAGAAGTGCACTCTCACTAGTCATTTTAACATTCACACTAAACCGTACAAGTGTCCTAAGTGTCCGTTGAAGGCAGCAaAATTATACGTTTTCCGATCACATCTAATTAAGATGCATGGTATTCATGATGATCCCAAATTATACATGACAAAATCCGAGTCAAGTATGAAGTGA
Protein Sequence: MYDPKNICRSCLAVDVKLFPLNAIVESGTRLDECFRAHMNVKISEDDGLPYNICVECLDKMAKFRKFYWRYLKSEAYLLELCMKSSFQRLEPDEAEAPVNDESKVDVEELVCDETGVCDEELLDDSTIVSTKVEEVPVEESLADTFDWNQVEFTESDKQDATSVNSTNNSSDGNLIQIMKTLLSIIDKTFQDRSKMTPHLRTHTGEKPYGCTICGRAFRQRSAMLTHMRLHTGKTISCPKCDKKFCRKGFLDIHMRVHDDIRPYACTLCDKKYRIKSHLSAHMLTHSDVRSFSCHVCGKLFKGKCALNGHLNIHIKPYNCPMCPLKAAIEDVELIPLNVIVEPGTRIDECFRWLMNVEISEGDGLPYNICVECLDKVVEFRKFYLRYMKSEAYLLELYMNSKTETEEPEASGNDEISHTQLEEEITIEDTKVEPEEYLESDTLDYDEEVSSDEVESTENDKLDLTSVTDTSNSGDGTKKCRPRKKQPKLIYCLQCHEKYPTRSELREHFNTEHGEDNAKGFCTQCSKTFPSRGKLMAHLHTHRHPATLVKCMYCDKTFQDRSKLAPHQRTHTGEKPYACTICGRAFSQRSVLNTHMKLHTGKTVSCPKCDKKFCRKGFLDVHMRVHEDIRPYACTLCDKKYRIKSHLSSHMLTHSDVRSFSCHVCGKSFKVKCTLTSHLNTHTKPYKCPKCPLKATNVELIPLDAIVEPGTRIDECFRLHMNVEISEGDGLPYNICVECLDKMVEFRQFYLRYMKSEAYLLELYMNSNCQHLLETEEVEASGSDDCKADIELLVDETVSDRELEEDITIVDTKVEPVEYLESDTLDYDEEASSAEVEFIENDKLDVISVSGTSNSGDDKTFHDRSKLAPHQRTHTGEKPYACTICGRAFSQRSILNTHMQLHTGKTVSCPKCDKKFCRKGFLDVHMRVHDDIRPYACTLCDKKYRIKSHLSSHMLTHSDVRSFSCHVCGKSFKEKCTLTSHFNIHTKPYKCPKCPLKAAKLYVFRSHLIKMHGIHDDPKLYMTKSESSMK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -