Basic Information

Insect: Chloromyia formosa
Gene Symbol: -
Assembly: GCA_964017055.1
Location: OZ024815.1:58619738-58645939[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0001 0.01 17.4 4.4 2 23 255 276 254 276 0.98

2 13 5.1e-05 0.0053 18.3 3.5 1 23 281 303 281 303 0.97

3 13 0.00032 0.033 15.8 1.2 1 23 317 339 317 339 0.96

4 13 0.00028 0.029 16.0 0.6 2 23 346 367 345 367 0.98

5 13 7.3e-05 0.0075 17.8 0.1 2 23 374 395 373 395 0.97

6 13 0.00068 0.071 14.8 1.4 1 23 404 426 404 426 0.92

7 13 1.4e-06 0.00014 23.3 0.5 2 23 433 454 432 454 0.96

8 13 1.5e-06 0.00015 23.2 3.9 1 23 460 482 460 482 0.99

9 13 2.5e-08 2.6e-06 28.7 1.5 1 23 488 510 488 510 0.99

10 13 6.5e-07 6.7e-05 24.3 0.5 1 23 516 538 516 538 0.98

11 13 3e-06 0.00031 22.2 4.2 1 23 544 565 544 565 0.99

12 13 4.8e-06 0.0005 21.6 1.7 1 23 571 593 571 593 0.98

13 13 5.4e-05 0.0056 18.2 0.9 1 23 599 621 599 621 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0001	0.01	17.4	4.4	2	23	255	276	254	276	0.98
2	13	5.1e-05	0.0053	18.3	3.5	1	23	281	303	281	303	0.97
3	13	0.00032	0.033	15.8	1.2	1	23	317	339	317	339	0.96
4	13	0.00028	0.029	16.0	0.6	2	23	346	367	345	367	0.98
5	13	7.3e-05	0.0075	17.8	0.1	2	23	374	395	373	395	0.97
6	13	0.00068	0.071	14.8	1.4	1	23	404	426	404	426	0.92
7	13	1.4e-06	0.00014	23.3	0.5	2	23	433	454	432	454	0.96
8	13	1.5e-06	0.00015	23.2	3.9	1	23	460	482	460	482	0.99
9	13	2.5e-08	2.6e-06	28.7	1.5	1	23	488	510	488	510	0.99
10	13	6.5e-07	6.7e-05	24.3	0.5	1	23	516	538	516	538	0.98
11	13	3e-06	0.00031	22.2	4.2	1	23	544	565	544	565	0.99
12	13	4.8e-06	0.0005	21.6	1.7	1	23	571	593	571	593	0.98
13	13	5.4e-05	0.0056	18.2	0.9	1	23	599	621	599	621	0.99

Sequence Information

Coding Sequence: ATGTCGACATTTAAGAGTGACGGAGTAAATGTGGTTTTACATATAAGCGGCAACGACCCGGGAATCGATTCTGTTGAGCTCGAATTCGGTCGCGAACAACCTCGCGAAACGACTTTGGTTAGCAATGTACCCCATGACACTTTCGCTGATAATGATGACACGGTAGCAGAGGATCGCGGCTGTTTAAGCGGACGTTTTAACTTTATTTGCCGCTTTTGTCTTGTGGAAGCAGACGATTTGATCGATATATTCGATGGGAATTTTTGTATTCGAGAAATGATTTCCATGCTAACTTCTGTGCAGATGTCCCTAGAGGATGTCTTCCCGAAAAACATTTGCATGATTTGCTACGACCAATTAACCAAATGCATAAGGTTTAAACAACAAGTGGAGACGGCTGACGTCACCCTGAAACAGTGCATCGTTAATGAACAAGTACAAAAACTTTCCGAAAATGGAGCTAAACCCACGACTAAATGTGAACTAGAAACTGCTCCGGAAACAAAAGAGATTTCATTGCACAAATCCTCGTCAAATGATCTCGAGAACGCCCATCATTTTGATGAATTTATTGAAGAAGATTACGGTTCGGCATGTGTAATGGTCTATGAAGGTGATCCTATTTTTGATTCTGAGTGCGACAAGGATTTAGAACAAGACAAAGTTGTTgatgttgcgccatccgaaggGCTTGTGGACAATCTCGCCGATAACTGTATCGTtcctttaaaaataaatgaatcgACCGAAACTGAAAGGGTAAAATGCGATCACTGCTGTAAAGTGTTTAACAATCAGTCACTCCTTATTAAACATATGAAAATTCATCAGCCACAAACACATGTGTGCGGCGAATGTCATAAAAGTTTTCCCCGGGCGGCCAACTTAGAGTGTCATATGAGAATGCATAGAGTGGAAAATGCTGACAAGGAAGAAACAGTTGCAACTTTCAAATGCACGAAATGTGATGCGTGCTTTACCGTGGAAAGTGATCTATTCGTACACGGATCAATTCATTTGGATGACGGAAAAAATCAGTGTCTGGAATGCTTGAAAGAATTTCCAAatCTACCCAAGCTCAAGCGCCACATCAAAACTCACTACAAAGACAAGCCGATAAAATGTGAACAGTGCGGACGTGGCTTCCCAGAAATGGCATCCCTAACACGCCACTATCGCATTCATACGAACGAACAGCGCGAACGAAAGCATGTTTGTAATAAATGCGGCAAATCCTACTATGATTTATATTCCCTGTCAGTCCACGATCGTGTTCACACGGGCGAAAAACCGTGGATTTGCACCGTATGCGATCGACGATTCACGGACTCTCGTCTTCTGAATTCTCACATGCGAATTCATGCGGACACGCGAAATTATTCGTGCACGATGTGCGAGAAAAGTTTCACCCATCGAAGTACACTGGTCAGTCATTTGAGAACGCATACCGGCGAGAAACcgtacgtctgtaccgtctgcAATAAATCGTTTATCCAATCGTCGAATCTTGTCCATCACATGCGCGTCCATTCGGGCGATAAACCGTACAATTGTCCCAAGTGCCCGAAAAGATTCGGCAGCTCGTCCTCGCTGTCCACGCATATACGCATCCATACGGGCGAGAAACCATACTCTTGCAAGCTGTGCGGCAAACGATTTAGTCGACACAATTTAACAGTTCACATGCGAACTCATACGGGCGAGAAACCGTATGAATGTAACGAATGTTCGCGAAAGTTCAGGACATCGGGACAATTGACGCAACATAAAATCACGCATACGGACAACAAACCGTACGTCTGTAAGGTTTGCAATAAGAGATGGGCAACGTCGTGGTATTTAAAAAAACATATGCAAACGCATACATTGAATGTTGAGGGCAGAGTCAGTGATGCTGATGATCTAACGGATCCTGCGGAACCAAATATCGAGGATGGGGAAGTTTCATTcaatcaacaacaacatcatcGTATTCGGATCGAGgagattgaaagtgacgcggaaTTCAACGAAAATGCCATGCTGGTGAATGACTTACTCGCGTCGGTAGTGAATGTTAACACAGACGTTTTACAAAGTGAAATGCCCGAGTTATCGACGAATGATTCAAATTCAGAttttagcgatttgaaaaaTGTAATAAGCACGAATCGATTCAATATCGATGATTCGAATAAAACGGAAATGGTAGCTGACGGCGTGTATGTGACGGAAGCGTAG
Protein Sequence: MSTFKSDGVNVVLHISGNDPGIDSVELEFGREQPRETTLVSNVPHDTFADNDDTVAEDRGCLSGRFNFICRFCLVEADDLIDIFDGNFCIREMISMLTSVQMSLEDVFPKNICMICYDQLTKCIRFKQQVETADVTLKQCIVNEQVQKLSENGAKPTTKCELETAPETKEISLHKSSSNDLENAHHFDEFIEEDYGSACVMVYEGDPIFDSECDKDLEQDKVVDVAPSEGLVDNLADNCIVPLKINESTETERVKCDHCCKVFNNQSLLIKHMKIHQPQTHVCGECHKSFPRAANLECHMRMHRVENADKEETVATFKCTKCDACFTVESDLFVHGSIHLDDGKNQCLECLKEFPNLPKLKRHIKTHYKDKPIKCEQCGRGFPEMASLTRHYRIHTNEQRERKHVCNKCGKSYYDLYSLSVHDRVHTGEKPWICTVCDRRFTDSRLLNSHMRIHADTRNYSCTMCEKSFTHRSTLVSHLRTHTGEKPYVCTVCNKSFIQSSNLVHHMRVHSGDKPYNCPKCPKRFGSSSSLSTHIRIHTGEKPYSCKLCGKRFSRHNLTVHMRTHTGEKPYECNECSRKFRTSGQLTQHKITHTDNKPYVCKVCNKRWATSWYLKKHMQTHTLNVEGRVSDADDLTDPAEPNIEDGEVSFNQQQHHRIRIEEIESDAEFNENAMLVNDLLASVVNVNTDVLQSEMPELSTNDSNSDFSDLKNVISTNRFNIDDSNKTEMVADGVYVTEA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -