Cfor022425.1
Basic Information
- Insect
- Chloromyia formosa
- Gene Symbol
- -
- Assembly
- GCA_964017055.1
- Location
- OZ024815.1:136930539-136978470[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 32 0.0029 0.3 12.8 0.1 2 23 165 186 164 186 0.95 2 32 0.029 3 9.7 2.0 2 23 329 350 328 350 0.95 3 32 5.3e-05 0.0055 18.3 1.4 3 23 358 378 357 378 0.98 4 32 0.0013 0.13 13.9 0.1 3 23 386 406 385 406 0.97 5 32 0.022 2.2 10.1 0.7 2 23 550 571 550 571 0.96 6 32 0.00019 0.02 16.5 0.4 2 23 578 599 578 599 0.97 7 32 0.18 19 7.2 3.3 2 23 670 691 669 691 0.95 8 32 0.00019 0.02 16.5 0.4 2 23 698 719 698 719 0.97 9 32 0.00022 0.022 16.4 4.3 2 23 726 747 726 747 0.97 10 32 1.9 2e+02 3.9 1.6 2 23 891 912 890 912 0.95 11 32 0.0031 0.32 12.7 0.4 2 22 919 939 919 939 0.95 12 32 0.00044 0.046 15.4 0.3 2 23 947 968 947 968 0.97 13 32 6.5e-05 0.0067 18.0 0.5 2 23 975 996 975 996 0.97 14 32 0.2 21 7.0 0.3 2 23 1070 1091 1069 1091 0.95 15 32 0.00018 0.019 16.6 0.5 2 23 1098 1119 1098 1119 0.97 16 32 0.036 3.7 9.4 0.4 2 23 1305 1326 1304 1326 0.95 17 32 0.00019 0.02 16.5 0.4 2 23 1333 1354 1333 1354 0.97 18 32 4.6e-05 0.0048 18.5 0.8 2 23 1361 1382 1361 1382 0.97 19 32 3.4 3.6e+02 3.1 2.0 2 23 1453 1474 1452 1474 0.93 20 32 0.0026 0.27 12.9 0.5 3 22 1481 1500 1480 1500 0.95 21 32 1.9 2e+02 3.9 1.6 2 23 1649 1670 1648 1670 0.95 22 32 0.00033 0.034 15.8 0.6 2 23 1677 1698 1677 1698 0.97 23 32 0.006 0.62 11.8 0.5 2 23 1750 1771 1749 1771 0.96 24 32 0.00075 0.077 14.7 0.8 3 22 1778 1797 1777 1797 0.96 25 32 0.00088 0.091 14.4 0.1 2 23 1806 1827 1805 1827 0.97 26 32 0.0027 0.28 12.9 2.7 1 23 1831 1853 1831 1853 0.93 27 32 4.5e-07 4.6e-05 24.8 2.0 1 23 1859 1881 1859 1881 0.98 28 32 0.00023 0.023 16.3 3.5 1 23 1887 1909 1887 1909 0.97 29 32 1.9e-05 0.002 19.7 0.2 1 23 1915 1937 1915 1937 0.99 30 32 0.00084 0.086 14.5 2.9 1 23 1943 1965 1943 1965 0.98 31 32 0.0004 0.041 15.5 3.1 1 23 1971 1993 1971 1993 0.97 32 32 0.0018 0.18 13.5 0.5 1 23 1999 2021 1999 2021 0.97
Sequence Information
- Coding Sequence
- ATGTCGAATATGGGAGATGAGGAGGAAATTCGAGCTCTGTTCACACTCTGTACCCAGTTGGCGATCAGTGAAAATGATGATCTACCACTGCACCTTTGCAATCATTGCATTCAACAATGCGTCACATGGTTATCTTTCAAAAAACAATGTGAAGATTCAGAGGAAGAGTTACGCAAGATAGTAGGACAACAAGAAGAACCTATAAAAGTCGAGCCCAACGAAGAAGCTTTCATCCTTGAGAATATTTCTGGAGAAGGTGACAGTGCAGTTCAAAACAATGAAGATTCAGAGGCAGATCTAGAAAAGACAGTAGTAAATATCCAGTCCACAGAAGAAGTCCCTCAGAACAATCCCGAAGACAGTGAAAATGAATTGCATGACAATGAAGCTGCGGACCCCGAATTTACTGAACATGACCCCGATGTCACTGCAGATATCCATATGAAAACAAAGTCATCAAATTCAAAACCGAAAGCTGTTACTAAGAAACTTTCTTGTCCACTATGTGAAAAATCGTTTCAAAATGCGGAACGATTAGAAGCTCACAATCGCTGGCATGCCGGACTGAAACCCGAGgTCGATGAGAATGATGATCTACCATTGCACCTTTGCAGCCGTTGCATTGAACAATGCGCCTCATGGTTAGCTTTCAAAAAACAATGTGATGATTCAGAGGAAGAATTACGCAAGAAATTAGTGCAGCAGACAGAATTTATAAAAGTTCAATCCAACGAAGAAGATTTCGACCGTCATGATGATAATGAGGATGAATTTCAAAACAATGAAGACTTAGGGGCCGACTTAGCCAAGATAGAAGTGAAATGTGAACTCAAAGAAGAAGATTCCGACGTTGAGAGCAATCCGGAAAATAGTGAAACTGAATTTCATAGCAATGAAGCCGTAGATCCCATTATCACTGAACCCGAGAAAACGAACACATCAAATGCAAAAGCAAAAGTTGCttctaaaaaatataaaaaacttTCTTGTACATTATGtgaaaaacattttaaaagtgCAGAACGATTTGAAGCTCACAATCGCTTGCATGCAGGACTGAAACCCGAGATCTGCAACATATGCAATAAAGAGTTCAACAATCCACGATCACTTTATAATCACCGCAGAAAGCATGCAGGACTGAAACCCGCGATTTGCAACGTATGCAATGAAGAGTTCGACAATCGAGCAGCACTTTATCGTCACCGCGCAACGCATTCGAATAATCAGGCTCATgTCGATGGAAATGATAATCTACCATTGCACCTTTGCAGTCATTGCGTTGAACAATGCACCTCATGGTTAGCTTTCAAAAAACAATGTGAAGATTCAGAGGAAGAATTACGAAAGAAAGTAGTGCATCAACCAGAATTTATAAAAGTCCAATGCAACGAAGAAGCCTTCGACCCCCAATATATTGCTGGAAATAATGAGAATGAATTTCAAAACAATGAAGATTCAGAGGCAGACATAGCCAAGATAGAAGTGAAGTGTGAACTCAAAGAAGAAGATTTCAACCTTGAGAGCAATCCCGAAAATAGTGAAAATGAATTTCATAGCAATGAAGCTGTAGACCCCATTATCCCTGTGAAAACGAAGTCAtcaaatggaaaattaaaagtTGCTTATAAGAAATATAAGAAACGTTCTTGTACGTTATGCGAAAAAACGTTTTATAGTGCAGAACGATTTGAAGCTCACAATCGCTTGCATGCAGGACTGAAACCCGAGGTTTGTAACGTGTGCAATGAGGAGTTCGACAATCCACGATCACTTTATAACCACCGCAGAACGCATGCAGGACTGAAACCCGCGGTTTACAACGTACGCAATGATGGATTGGACAATCAAGCAGCACTTGATCACCGTGAGAGTGATCCCGAAAGTAGTGAAAACGAATTTGATAGCAACGATGCCATAGACCCCATTGTCACTGAACATATCCCCGTGAAAACGAAATTATCAAATGCAAAATCAATAGTTGCTTctaagaaatataaaaaactTTCTTGTAAATTAtgcaaaaaacattttaaaagtgTAGAACGATTTGAAGCTCACAATCGCTTGCATGCAGGACTGAAACCCGAGGTTTGCAACGTATGCAATGAAGAGTTCGACAATCCACGATCGCTTTATAATCACCGCAGAACGCATGCTGAACTGAAACCCGCGGTTTGCAACGTATGCAATAAAGAGTTCAACAATCGACGATCACTTCATAATCACCGCAGAACGCATGCAGGATTAAAACCCGAGgtCGATGAAAATGATGGTCTACCGTTGGACCTTTGCAGTCATTGCGTTGAACAATGCGCTTCATGGTTATCTTTCAAAAAACAATGTGAAGATTCAGAGGAAGAATTACGCAAGAAAGTAGTGCAGCAAACAGAATTTATAAGAGTCCAATGCCACGAAGAAGTCTTGGACCCTCAACATATTGCTGGAAATAATGAGAAtgaatttcaaaacaataaaaattcagAGGCAGACCTAGCCAAGGAAGAAGTGAAGTTTGAACTCAAAGAAGAAGATTTCGACCTTGAGAGCAATCCCGAAAGTAGTGAAAATGAATTTCATAGCAATGAAGCTGTAGACCCCATTATCCCTGTGAAAACGAAATCAtcaaatggaaaattaaaagtTGCTTATAAGAAATATAAGAAACTTTCTTGTACGTTAtgtgaaaaacattttttaagtGCAGAACGATTTGAAGCTCACAATCGGTCGCATGCAGGACTGAAACCCGAGGTTTGCAACGTATGCGATGAAGAGTTCGACAATCCACGATCACTTCATAATCACCGCAGAAAGTGTACAGGACTGAAACCCGCGGTTTGCAACGTTTGCAATGAAGAGTTCGACAATCCACGATTACTTTATAGTCACCGTAGAACGCATGCAGAACTGAAACCCGCGGTTTGCAACGTATGCGATAGGGAGTTCGACAATCAACGATCACTTGCGAATCACCGCAGAATGCATGCTAGACCGAAACCAGCAGTTCACAACGTATGCAATGAAGGATTCGACAATCGAGTAGCACTTGAGCATCTTAAGAGCAATCCCGAAAATAGTGAAAATGAATTTCATAGCAATGAAGCCGCAGACCCCATTGCCACTGAACGTATCCCATGTATCCCTGTGAAAAAGAAGTCACCAAATGCAAAAGTAAAAGTTGCATATAACAAATATAAGAAACTTTCTTGTACGTTATGCGAAACAGTTTTTTTCAGTGCAGAACGATTTGAAGCTCACAATCGCTTGCATGCAGGACTTAAACCCGAGGTTTGCAACGTGTGCAATGAGGAGTTCGACACTCCACGATCACTTTATAATCACCGTAGGACGCATGCTGGACTGAAACCCGCGGTTTACAACGTATGCAATGAAGGGTTCGACAATCAAGCAGCACTTGAGCACCTTAAGAGCAATCCCGAAAATAGTGAAAATGTATTTCATAGCGATGATCCCCTAGACCCCATTgtCGATGAAAATGATGGTCTACCGTTGCACCTTTGCAGTCATTGCGTTGAACAATGCGCTTCATGGTTATCTTTCAAAAAACAATGTGAAGATTCAGAGGAAGAATTACGCAAGAAAGTAGTGCAACCTCAGGAATTTATAAAAGTCCAATCCAACGAAGAAGCCTTCGACCCTCAACATATTGCTGGAAATAATGAGAATGAATTTCAAAACAATGAAGATTCAGAGGCAGACCTAGCCAAGATAGAAGTGAAGTGTGAACTCAAAGAAGAAGATTTCGACCTTGAGAGTAATCCCGAAAATAGTGAAAATGAATTTCATAGCAATGAAGCCGCAGACCCCATTGCTACTGAACGTGTCCCTGTGAAAAAGAAGTCACCAAATGCAAAAGTAAAAGTTGCATATAAGAAATATAAGAAACTTTCTTGTACGTTATgcgaaaaagtttttttcagtGCAGAACGATTTGAAGCTCACAATCGCTTGCATGCAGGACTTAAACCCGAGGTTTGCAACGTGTGCAATGAGGAGTTCGATAATCCACGATCACTTTATAATCACCGTAGGACGCATGCAGAACTGAAATCCGCGGTTTGTAACGTATGCAACAAGGAGTTCGACAATCAACGGTCACTTGCTAATCACCGCAGAATGCATGCTGGACTGAAACCCGCGGTTGACAACGTATGCAATGAAGGGTTCGACAATCAAGCAGCACTTGAGCACCTTAAGAGCAATCCCGAAAATAGTGAAAATGTATTTCATAGCAATGATCCTGTAGACCCCATTGTCACTGAACATATCCCTGTGAAAACGAAGTCATCAAATGCAAAATCGAAAGTTGCTTATAAGAAATTTAAGAAGCTATCTTGTACGTTATGCAAAAAACATTTTCTAAGTGCAGAACGATTTGAAGCTCACAATCGCTTGCATGCAGGACTGAAACCCATTTGCAACGTTTGTAATAAAGAGTTCATCAATTCACGATTACTTTATAATCACCGCAGAAAGTGTACAGGACTGAAACCCGCGGTCCGTGAAAATGATGATCTACCATTGCACCTTTGCCGGCATTGCATTGAACAATGCGCCTCATGGTTATCTTTCAAAAAACAATGTGAAGATTCAGAGGAAGAATTACGCAAGAGATTAGTGCAGCAGACAGAATTTATAAAAGTCCAATCCAACGAAGAAGCCTTCGACTCTCAACATATTGCTGAAAATAATGAGCATGAGTTTCAAAACAATGACGATTTAGAGACGGACCTAGCCAAAATAGAAGTGAAGTGTGAACTCAAGGAAGAAGATTTCGACCTTGAAACCATTCGCGAAAATAGTGAAAATGAACTTCATAGCAATGACGCCAAAGATCCCTTTGTCACTGAACATATCCCTGTGAAACCGAAGTCATCAAATGGAAAATCAAAAGTTGCTTATAAGAAATATAAGAAACTCTCTTGTACGTTAtgtgaaaaacattttttaagtGCAGAACGATTTGAAGCTCACAATCGGTCGCATGCAGGACTGAAACCCGAGGTTTGCAACCTATGCAATGAGGAGTTCGACAATCCACGATCACTTTATAATCACCGCAGAACGCATGCTGGACTGAAGTCTGCGGTTTACAACATATGCAATGAAGGGTTCGACAATCGAGCAGCACTAGATACAGCCGTAGATCCCATTGTCACTGAACATGTCGCTGTGAAAACGAAATCATCAAATGCAAAATTAAAAGATGAATGTAAGAAACTTTCTTGTACATTGTgcgaaaaaatatttaaaagtgCAGAACGATTTGAAGCTCACAGTCGCTCGCATGCAGGACTGAAACCCATTTGCAACGTATGCAATAAAGAGTTCAACAATTCACGATCACTTTATAATCACCGCAGAACGTGTGCAGCAGTACTGAAACATGTTGTTTGCAACGTGTGTAATGAAGGGTTCGACAATCGAGCAGCACTTTATCGCCACCGCGCAACGCATAAAAAGGCTCATGTATGCCAGGAGTGTGGAAAGACCTACAAATATGCAGACGCGCTGAGACTGCATTGCAAAATCCACGGAGCACCACCACGCTTTATTTGCGAGCATTGCGGAAAAGTATTTTATCGTGCGGGCCATCTACAGGAACACATGTTAACTCATACATCGAACACTCCCTACCAGTGCGATATTTGTTCCAAACGATTCAAAAGCACTGGCCTGCTTCGACATCATAAGATCCGACACGAAGGTATTAAACGATTCAAATGTGACGATTGCGGAAAATTATTGACCTCACGGGCGGGACTTCGAATTCACATCCGAACCCACACGGGCGATAGGCCTTTTAACTGTGAATTTTGCAGCATGAATTTTAAAACAATGAGTTATTTAACAATCCACAGACGAACGCATACGGGAATACGGCCTTATGTATGTGATATTTGCTCGCGGGAATTCGCCCACAAAAATGCTCTGAAACGGCATCATTTACAACATACAGGCGAGCGACCGCATGTGTGTAGTATATGTGATAAAGCCTTTCTAGAGGCCTATACATTGAAAAAGCATTTGCTTGTGCATAGCAGACGACCAGAGTGA
- Protein Sequence
- MSNMGDEEEIRALFTLCTQLAISENDDLPLHLCNHCIQQCVTWLSFKKQCEDSEEELRKIVGQQEEPIKVEPNEEAFILENISGEGDSAVQNNEDSEADLEKTVVNIQSTEEVPQNNPEDSENELHDNEAADPEFTEHDPDVTADIHMKTKSSNSKPKAVTKKLSCPLCEKSFQNAERLEAHNRWHAGLKPEVDENDDLPLHLCSRCIEQCASWLAFKKQCDDSEEELRKKLVQQTEFIKVQSNEEDFDRHDDNEDEFQNNEDLGADLAKIEVKCELKEEDSDVESNPENSETEFHSNEAVDPIITEPEKTNTSNAKAKVASKKYKKLSCTLCEKHFKSAERFEAHNRLHAGLKPEICNICNKEFNNPRSLYNHRRKHAGLKPAICNVCNEEFDNRAALYRHRATHSNNQAHVDGNDNLPLHLCSHCVEQCTSWLAFKKQCEDSEEELRKKVVHQPEFIKVQCNEEAFDPQYIAGNNENEFQNNEDSEADIAKIEVKCELKEEDFNLESNPENSENEFHSNEAVDPIIPVKTKSSNGKLKVAYKKYKKRSCTLCEKTFYSAERFEAHNRLHAGLKPEVCNVCNEEFDNPRSLYNHRRTHAGLKPAVYNVRNDGLDNQAALDHRESDPESSENEFDSNDAIDPIVTEHIPVKTKLSNAKSIVASKKYKKLSCKLCKKHFKSVERFEAHNRLHAGLKPEVCNVCNEEFDNPRSLYNHRRTHAELKPAVCNVCNKEFNNRRSLHNHRRTHAGLKPEVDENDGLPLDLCSHCVEQCASWLSFKKQCEDSEEELRKKVVQQTEFIRVQCHEEVLDPQHIAGNNENEFQNNKNSEADLAKEEVKFELKEEDFDLESNPESSENEFHSNEAVDPIIPVKTKSSNGKLKVAYKKYKKLSCTLCEKHFLSAERFEAHNRSHAGLKPEVCNVCDEEFDNPRSLHNHRRKCTGLKPAVCNVCNEEFDNPRLLYSHRRTHAELKPAVCNVCDREFDNQRSLANHRRMHARPKPAVHNVCNEGFDNRVALEHLKSNPENSENEFHSNEAADPIATERIPCIPVKKKSPNAKVKVAYNKYKKLSCTLCETVFFSAERFEAHNRLHAGLKPEVCNVCNEEFDTPRSLYNHRRTHAGLKPAVYNVCNEGFDNQAALEHLKSNPENSENVFHSDDPLDPIVDENDGLPLHLCSHCVEQCASWLSFKKQCEDSEEELRKKVVQPQEFIKVQSNEEAFDPQHIAGNNENEFQNNEDSEADLAKIEVKCELKEEDFDLESNPENSENEFHSNEAADPIATERVPVKKKSPNAKVKVAYKKYKKLSCTLCEKVFFSAERFEAHNRLHAGLKPEVCNVCNEEFDNPRSLYNHRRTHAELKSAVCNVCNKEFDNQRSLANHRRMHAGLKPAVDNVCNEGFDNQAALEHLKSNPENSENVFHSNDPVDPIVTEHIPVKTKSSNAKSKVAYKKFKKLSCTLCKKHFLSAERFEAHNRLHAGLKPICNVCNKEFINSRLLYNHRRKCTGLKPAVRENDDLPLHLCRHCIEQCASWLSFKKQCEDSEEELRKRLVQQTEFIKVQSNEEAFDSQHIAENNEHEFQNNDDLETDLAKIEVKCELKEEDFDLETIRENSENELHSNDAKDPFVTEHIPVKPKSSNGKSKVAYKKYKKLSCTLCEKHFLSAERFEAHNRSHAGLKPEVCNLCNEEFDNPRSLYNHRRTHAGLKSAVYNICNEGFDNRAALDTAVDPIVTEHVAVKTKSSNAKLKDECKKLSCTLCEKIFKSAERFEAHSRSHAGLKPICNVCNKEFNNSRSLYNHRRTCAAVLKHVVCNVCNEGFDNRAALYRHRATHKKAHVCQECGKTYKYADALRLHCKIHGAPPRFICEHCGKVFYRAGHLQEHMLTHTSNTPYQCDICSKRFKSTGLLRHHKIRHEGIKRFKCDDCGKLLTSRAGLRIHIRTHTGDRPFNCEFCSMNFKTMSYLTIHRRTHTGIRPYVCDICSREFAHKNALKRHHLQHTGERPHVCSICDKAFLEAYTLKKHLLVHSRRPE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -