Cfor035358.2
Basic Information
- Insect
- Chloromyia formosa
- Gene Symbol
- grau_1
- Assembly
- GCA_964017055.1
- Location
- OZ024818.1:10471450-10494426[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 31 0.58 60 5.6 0.2 2 23 277 299 276 299 0.94 2 31 1.3e-05 0.0013 20.2 2.9 1 23 331 353 331 353 0.98 3 31 0.0013 0.14 13.9 0.6 1 20 361 380 361 383 0.93 4 31 0.00049 0.051 15.2 3.5 1 23 391 414 391 414 0.96 5 31 0.052 5.4 8.9 1.5 1 23 420 442 420 442 0.96 6 31 0.00028 0.028 16.0 0.3 2 23 451 472 451 472 0.97 7 31 0.002 0.21 13.3 1.0 1 23 479 502 479 502 0.94 8 31 7.7e-05 0.0079 17.8 0.5 1 23 508 530 508 530 0.99 9 31 2.8e-05 0.0029 19.1 4.9 1 23 536 559 536 559 0.98 10 31 1.5e-05 0.0016 20.0 3.3 1 23 838 860 838 860 0.98 11 31 0.0028 0.29 12.9 0.4 1 20 868 887 868 890 0.93 12 31 0.00027 0.028 16.0 2.9 1 23 898 921 898 921 0.96 13 31 0.052 5.4 8.9 1.5 1 23 927 949 927 949 0.96 14 31 0.0013 0.13 13.9 0.2 2 23 958 979 958 979 0.97 15 31 0.58 60 5.6 0.2 2 23 1110 1132 1109 1132 0.94 16 31 1.3e-05 0.0013 20.2 2.9 1 23 1164 1186 1164 1186 0.98 17 31 0.0013 0.14 13.9 0.6 1 20 1194 1213 1194 1216 0.93 18 31 0.00049 0.051 15.2 3.5 1 23 1224 1247 1224 1247 0.96 19 31 0.052 5.4 8.9 1.5 1 23 1251 1273 1251 1273 0.96 20 31 0.0012 0.13 14.0 0.2 2 23 1282 1303 1282 1303 0.97 21 31 0.00064 0.066 14.9 0.3 1 23 1310 1333 1310 1333 0.95 22 31 0.00013 0.013 17.1 0.7 1 23 1339 1361 1339 1361 0.99 23 31 2.8e-05 0.0029 19.1 4.9 1 23 1367 1390 1367 1390 0.98 24 31 1.5e-05 0.0016 20.0 3.3 1 23 1718 1740 1718 1740 0.98 25 31 0.0028 0.29 12.9 0.4 1 20 1748 1767 1748 1770 0.93 26 31 0.00049 0.051 15.2 3.5 1 23 1778 1801 1778 1801 0.96 27 31 0.052 5.4 8.9 1.5 1 23 1807 1829 1807 1829 0.96 28 31 0.0013 0.13 13.9 0.2 2 23 1838 1859 1838 1859 0.97 29 31 0.002 0.21 13.3 1.0 1 23 1866 1889 1866 1889 0.94 30 31 7.7e-05 0.0079 17.8 0.5 1 23 1894 1916 1894 1916 0.99 31 31 2.8e-05 0.0029 19.1 4.9 1 23 1922 1945 1922 1945 0.98
Sequence Information
- Coding Sequence
- ATGATTTGCCGAATGTGTTTATTGGAATCGGATGAGGCTTTAGAGATATTTTCCACAGAATATTCAAGGTATAATATACCGTCGACGATAGCGCAACACTTCTGGTTTGAGCCTAAACACGACGATCgaatttccaatcaaatttgCAATGATTGTTGGTGGAAAATTGAATCTTTTCATACTTACTATCTAAGCGTGGAGGAAGCCCATCGTGATTTGTCGAGACTTCCAGTTGTACACCCTGGCAGTGTGGATGATGACATTAAAGTCAAGGTGGAAGTAGAAGGAAGCCAAATCGCTTTCATTGATGTTAACCAGCAGAATATAGGGGAGCAGAGCAGCACTTATGaCAATGAAGTGGGCTTTGTCAAATTGGAAATACATGAAGAGGACAAGGAAGTAATATTGAATCAGGAACCCGACAGTAAAGTTATAGAACAAAATAACATCAAACACCCCGATGCCGAACCAGAGAAAAAGAAACGTTTGACATCTCGAGCTGCCAAAAGTCgttcaaaatatttggaaaCTGAGGAAAATATAGAGGAACTGGTTAAAGTGGAAACGGTGGATGAATCGGTAATAAATAATGATACATGCGAAGAATCAGATAGTGACTATGAACCGCTTGCACGAATGCTTCCCAAAAGAAAGCGTTGCAAAACGACTAAAAAGCCCCAAGAAAAACATTGCGAAACGATTAAAAAGCCCCAAGAAAAATCCAAATCGGACTGTACTAAAACCCAACAAAAGGGCAAATATTCGTCAGAAGAATATTTGAACAAGCTAAAGGAAGATGAtctgaaaatttcaaaacatatGAAACTGAAATGTGACCTTTGCAACGAAGAGTTTCAGTCATTTATAGAAGTTAAAGCACACTTTCGTGAAGCACATAACAAACGGGGATATGTGGTGTGTTGCAATAAACGACTGTACAAGAGAGTTTTCCTTGTGGATCATGTTAATAGACATCTAAATCCAGAATATTTCAAATGTGACGAGTGCAATAAAACATTTGCCGATAAACAGTGCTTGCAACTTCACATGATTCGACACCAATCGGACGAATCGAAGATGTTTCCGTGCGAACAATGTCCAAAACGATTTGCCAAACAATATATGTTGGAACAGCATAGGTGGTCTCATATACCAGAGGAGGAACGTGAGCATAGATGCCAGGATTGTGGCAAAGCGTTCCCAACGCATGGTCGACTACAAACACATCGTAAATATGTTCACGAAAAACTCTACGGACATATGTGTCATATTTGCGCCAAAGTGATTAGCGGGAAGGAGCAATTTGCAAAACATCAATTAGAACACGCCGGTGTACCAGTTCCGAGAGAAGAATGCCCTGTTTGTGGCGCTATGTTGAAGACTAAACAGTATTTGAGGAAACATTTAAGGCTTCACACTGAGGTAGATATGGAGCACAAATGCAAGATTTGTGGCAAAGTGGCACCATCGAGGGGAGCTTTGAAGAGCCATGTTCATTATGTGCATTCGTCTGATCGATCATATAAATGCAGCGTATGTGACAAAGGGTTTAAGAAAGCGATTGTTCTGAAGGAACATATGACAACCCACACTGGCGAAGTATTGTATAAGTGCCCGCATTGTCCAAAGACATTCAATTCCCATGCTAATATGCATGCACATATAAAGAGAGTTCATAAAAAAGAATGGGAAGAAGGACGTAAGAATCGACCCGGACCTTCTGAAAATCCGAACTCAGCCGAAAATGCAACCTCGATGGAAAATGCAACCCCAAGTGGAAATGCAATCCCAAGCGAAAATGCAACCTCAGCTGAAAGTGGAATTTTAAGCGAAAATGATACTTTGAAAACTGCAACTGAAATCTATGAAAGTGCTCTAAATAAATTGGCAATGCAGCACTTTATGAATATGAACATGAATATtttgatttttttttcaatctggtTTCTAGTTATAGAACAAAATAACATCAAACATCCCGATGTCGAACCAGAGAAAATAAAACGTTTAACATTTCGAGCTGTCAAAAATCgttcaaaatatttggaaaCTGAGGAAAATATAGAGGAACTTGTTAAAGTGGAAACGGTCGATGTTTCGCTATTCAAAAATGATACAAACGAAGAATCGGAGAGCGACTATGAACCGCTTGCACGAATACTTCTTAAAAGAAAGCGTTGCAAGACGACTAAAAAGTCACAAGAAACTCGTTTGAAAACGATTAAAAAGACCCCGGAAAAATCCAAATCAGACAGTATTAAAACCCAACAAAAGGGCAAATACTCATCAGGAGAATATTTGAACAAACTAAAGGAAGATGACCTGAAAATTGCAAAACATATGAAACTGAAATGTGATCTTTGCAATGAGGAGCTTCAGACATTTGCAGAAATTGAAGCACACTTTCGTGAAGCACACCACAAAAGGGGATATGTGGTTTGTTGCAATAAACGACTGTATAAGAGAGTTTCTCTTGTGGATCATGTTAATAGACATCTTAATCCTGAATATTTCAAATGTGACGAGTGCAATAAAACATTTGCCGATAAACAGTGCTTGAAACTCCACATGATTCGACACCAATCGGACGAATCGAAAATGTTTCCGTGCGAACAATGTCCAAAGCGATTTGCCAAACAATATATGTTGGAACTGCATAGGTGGTCTCATATACCAGAGGAGGAACGTGAGCATAGATGCGAGGATTGTGGCAAAGCGTTCCCAACGCATGGTCGACTACAAACACATCGTAAATATGTTCACGAAAAACTCTACGGACATATGTGTCATATTTGCGCCAAAGTGATTAGCGGGAAGGAGCAATTTGCAAAACATCAATTAGAACACGCCGGTGTACCAGTTCCGAGAGAAGAATGCCCTGTTTGTGGCGCTATGTTGAAGACTAAACAGGTTTTGAGGAAGCATTTAAGGATCCACACTGAAGTAGATATGGAGCACAAATTTATAGAACAAAATAACATCAAACACCCCGATGCCGAACCAGAGAAAAAGAAACGTTTGACATCTCGAGCTGCCAAAAGTCgttcaaaatatttggaaaCTGAGGAAAATATAGAGGAACTGGTTAAAGTGGAAACGGTGGATGAATCGGTAATAAATAATGATACATGCGAAGAATCGGATACTGACTATGAACCGCTTGCACGAATGCTTCCCAAAAGAAAGCGTTGCAAAACGATTAAAAAGCCCCAAGAAAAATCCAAATCGGACTGTACTAAAACCCAACAAAAGGGCAAATATTCATCAGAAGAATATTTGAACAAGCTAAAGGAAGATGAtctgaaaatttcaaaacatatGAAACTGAAATGTGACCTTTGCAACGAAGAGTTTCAGTCATTTATAGAAGTTAAAGCACACTTTCGTGAAGCACACAACAAACGGGGATATGTGGTGTGTTGCAATAGACGACTGTACATGAGAGTTTTCCTTGTGGATCATGTTAATAGACATCTAAATCCAGAATATTTCAAATGTGACGAGTGCAATAAAACATTTGCCGATAAACAGTGCTTGCAACTTCACATGATTCGACACCAATCGGACGAATCGAAGATGTTTCCGTGCGAACAATGTCCAAAACGATTTGCCAAACAATATATGTTGGAACAGCATAGGTGGTCTCATATACCAGAGGAGGAACGTGAGCATAGATGCCAGGATTGTGGCAAAGCGTTCCCAACGCATGGTCGACTACAAACACATCGTAAATATGTTCACGAAAACGGACATATGTGTCATATTTGCGCCAAAGTGATTAGCGGGAAGGAGCAATTTGCAAAACATCAATTAGAACACGCCGGTGTACCAGTTCCGAGAGAAGAATGCCCTGTTTGTGGCGCTATGCTGAAGACTAAACAGGTTTTGAGGAAGCATTTAAGGGTCCACACTGAAGTAGATATGGAGCACAAATGTAAGATTTGTGGCAAAGTGGCACCATCGAGGGGAGCTTTGAAGAGCCATGTTCAGTATGTGCATTCGTCTGATCGATCATATAAATGCAGCGTATGTAACAAAGGGTTTAAGAAAGCGATTGTTTTGAAGGAACATATGACAACCCACACTGGCGAAGTATTGTATAAGTGCCCGCATTGTCCAAAGACATTCAATTCCCATGCTAATATGCATGCACATATAAAGAGAGTTCATAAAAAAGAATGGGAAGAAGGACGTAAGAATCGACCCGGACCTTCTGAAAATCCGAACTCAGCCGAAAATGCAACCTCGATGGAAAATGCAACCCCAAGTGGAAATGCAATCCCAAGCGAAAATGCAACCTCAGCTGAAAGTGGAATTTTAAGCGAAAATGATACTTTGAAAACTGCAACTGAAATTTATGAAAGTGCTCTAAATAAATTGGCAATGCAGCACTTTATGAATATGAACATGAATATAGAAGATCTCTACTTGGCTACTAGCCAAGACGCAAACCGCGATGTttcacccggtgaaataggaatcgAAAAGAAAGatcgtatagttttgaaatttggcacaattgatgtggagagtctTCTGAATATGTATGCTCCAAAGTTCCCGTTGATGGAGTGTCCGGGAGTGGAGGATAAAGGGGAACAAAATAACATCAAACATCCCGATGTCGAACCAGAGAAAATAAAACGTTTAACATTTCGAGCTGTCAAAAATCgttcaaaatatttggaaaCTGAGGAAAATATAGAGGAACTTGTTAAAGTGGAAACGGTCGATGTTTCGCTATTCAAAAATGATACAAACGAAGAATCGGAGAGCGACTATGAACCGCTTGCACGAATACTTCTTAAAAGAAAGCGTTGCAAGACGACTAAAAAGTCACAAGAAACTCGTTTGAAAACGATTAAAAAGACCCCGGAAAAATCCGAATCAGACAGTATTAAAACCCAACAAAAGGGCAAATACTCATCAGGAGAATATTTGAACAAACTAAAGGAAGATGACCTGAAAATTGCAAAACATATGAAACTGAAATGTGATCTTTGCAATGAGGAGCTTCAGACATTTGCAGAAATTGAAGCACACTTTCGTGAAGCACACCACAAAAGGGGATATGTGGTTTGTTGCAATAAACGACTGTATAAGAGAGTTTCTCTTGTGGATCATGTTAATAGACATCTTAATCCTGAATATTTCAAATGTGACGAGTGCAATAAAACATTTGCCGATAAACAGTGCTTGAAACTCCACATGATTCGACACCAATCGGACGAATCGAAAATGTTTCCGTGCGAACAATGTCCAAAGCGATTTGCCAAACAATATATGTTGGAACTGCATAGGTGGTCTCATATACCAGAGGAGGAACGTGAGCATAGATGCCAGGATTGTGGCAAAGCGTTCCCAACGCATGGTCGACTACAAACACATCGCAAATATGTTCACGAAAAACTCTACGGACATATGTGTCATATTTGCGCCAAAGTGATTAGTGGGAAGGAGCAATTTGCAAAACATCAATTAGAACACGCCGGTGTACCAGTTCCGAGAGAAGAATGCCCTGTTTGTGGCGCTATGTTGAAGACTAAACAGGTTTTGAGGAAGCATTTAAGGATCCACACTGAAGTAGATATGGAGCACAAATGTAAGATTTGTGGCAAAGTGGCCCCATCGAGGGGAGCTTTGAAGAGCCATGTGCATTATGTGCACTCCAATCGATCATATAAATGCAGCGTATGTGACAAAGGGTTTAAGAAAGCGATTGTTTTGAAGgAACATATGACAACCCACACTGGCGAAGTATTGTATAAGTGCCCGCATTGTCCAAAGACATTCAATTCCCATGCTAATATGCATGCACATATAAAGAGAGTTCATAAAAAAGAATGGGAAGAAGGACGTAATTGTAAGAATCGACCCGGAACCTCTAAAAATCTAAATTCAGCTGAAAATATGGCCTCGATCAAAAAAGCAGCCCCAAATGCAAATGCAGTCCCAAGCGAATATGCAACCACAAGTGAAAGTGCAATTCCAAGCGAAAATGATACTTTGAGAACTCCAAATGAAATTTACGGAAGTTGTCTAAATAAATTGGCAATGCAGCACTTGATGAATATTATATGA
- Protein Sequence
- MICRMCLLESDEALEIFSTEYSRYNIPSTIAQHFWFEPKHDDRISNQICNDCWWKIESFHTYYLSVEEAHRDLSRLPVVHPGSVDDDIKVKVEVEGSQIAFIDVNQQNIGEQSSTYDNEVGFVKLEIHEEDKEVILNQEPDSKVIEQNNIKHPDAEPEKKKRLTSRAAKSRSKYLETEENIEELVKVETVDESVINNDTCEESDSDYEPLARMLPKRKRCKTTKKPQEKHCETIKKPQEKSKSDCTKTQQKGKYSSEEYLNKLKEDDLKISKHMKLKCDLCNEEFQSFIEVKAHFREAHNKRGYVVCCNKRLYKRVFLVDHVNRHLNPEYFKCDECNKTFADKQCLQLHMIRHQSDESKMFPCEQCPKRFAKQYMLEQHRWSHIPEEEREHRCQDCGKAFPTHGRLQTHRKYVHEKLYGHMCHICAKVISGKEQFAKHQLEHAGVPVPREECPVCGAMLKTKQYLRKHLRLHTEVDMEHKCKICGKVAPSRGALKSHVHYVHSSDRSYKCSVCDKGFKKAIVLKEHMTTHTGEVLYKCPHCPKTFNSHANMHAHIKRVHKKEWEEGRKNRPGPSENPNSAENATSMENATPSGNAIPSENATSAESGILSENDTLKTATEIYESALNKLAMQHFMNMNMNILIFFSIWFLVIEQNNIKHPDVEPEKIKRLTFRAVKNRSKYLETEENIEELVKVETVDVSLFKNDTNEESESDYEPLARILLKRKRCKTTKKSQETRLKTIKKTPEKSKSDSIKTQQKGKYSSGEYLNKLKEDDLKIAKHMKLKCDLCNEELQTFAEIEAHFREAHHKRGYVVCCNKRLYKRVSLVDHVNRHLNPEYFKCDECNKTFADKQCLKLHMIRHQSDESKMFPCEQCPKRFAKQYMLELHRWSHIPEEEREHRCEDCGKAFPTHGRLQTHRKYVHEKLYGHMCHICAKVISGKEQFAKHQLEHAGVPVPREECPVCGAMLKTKQVLRKHLRIHTEVDMEHKFIEQNNIKHPDAEPEKKKRLTSRAAKSRSKYLETEENIEELVKVETVDESVINNDTCEESDTDYEPLARMLPKRKRCKTIKKPQEKSKSDCTKTQQKGKYSSEEYLNKLKEDDLKISKHMKLKCDLCNEEFQSFIEVKAHFREAHNKRGYVVCCNRRLYMRVFLVDHVNRHLNPEYFKCDECNKTFADKQCLQLHMIRHQSDESKMFPCEQCPKRFAKQYMLEQHRWSHIPEEEREHRCQDCGKAFPTHGRLQTHRKYVHENGHMCHICAKVISGKEQFAKHQLEHAGVPVPREECPVCGAMLKTKQVLRKHLRVHTEVDMEHKCKICGKVAPSRGALKSHVQYVHSSDRSYKCSVCNKGFKKAIVLKEHMTTHTGEVLYKCPHCPKTFNSHANMHAHIKRVHKKEWEEGRKNRPGPSENPNSAENATSMENATPSGNAIPSENATSAESGILSENDTLKTATEIYESALNKLAMQHFMNMNMNIEDLYLATSQDANRDVSPGEIGIEKKDRIVLKFGTIDVESLLNMYAPKFPLMECPGVEDKGEQNNIKHPDVEPEKIKRLTFRAVKNRSKYLETEENIEELVKVETVDVSLFKNDTNEESESDYEPLARILLKRKRCKTTKKSQETRLKTIKKTPEKSESDSIKTQQKGKYSSGEYLNKLKEDDLKIAKHMKLKCDLCNEELQTFAEIEAHFREAHHKRGYVVCCNKRLYKRVSLVDHVNRHLNPEYFKCDECNKTFADKQCLKLHMIRHQSDESKMFPCEQCPKRFAKQYMLELHRWSHIPEEEREHRCQDCGKAFPTHGRLQTHRKYVHEKLYGHMCHICAKVISGKEQFAKHQLEHAGVPVPREECPVCGAMLKTKQVLRKHLRIHTEVDMEHKCKICGKVAPSRGALKSHVHYVHSNRSYKCSVCDKGFKKAIVLKEHMTTHTGEVLYKCPHCPKTFNSHANMHAHIKRVHKKEWEEGRNCKNRPGTSKNLNSAENMASIKKAAPNANAVPSEYATTSESAIPSENDTLRTPNEIYGSCLNKLAMQHLMNII
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -