Cfor028479.1
Basic Information
- Insect
- Chloromyia formosa
- Gene Symbol
- -
- Assembly
- GCA_964017055.1
- Location
- OZ024816.1:103515682-103517364[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.063 58 5.0 0.1 9 29 107 127 105 137 0.83 2 11 0.00016 0.15 13.3 0.1 14 44 225 252 216 252 0.87 3 11 0.51 4.7e+02 2.1 0.2 14 29 298 313 292 320 0.79 4 11 0.49 4.6e+02 2.2 0.0 16 24 336 344 329 347 0.82 5 11 0.54 4.9e+02 2.0 0.1 16 26 364 374 350 380 0.74 6 11 0.012 11 7.4 0.8 16 39 392 416 383 420 0.72 7 11 3.9 3.6e+03 -0.7 1.7 18 38 422 443 408 447 0.69 8 11 6.9 6.4e+03 -1.5 0.6 6 25 439 457 435 459 0.52 9 11 0.18 1.6e+02 3.6 0.6 14 29 474 489 462 499 0.72 10 11 0.012 11 7.3 0.2 8 29 501 517 497 523 0.76 11 11 0.0016 1.5 10.1 0.8 10 34 527 547 518 556 0.75
Sequence Information
- Coding Sequence
- ATGGATAACACCATATCCCCGAAAAAGGAAGTCTTATCAGGAGAAATCAAAGAGGAAATCCCCAGTGACCTATTTGACAACAGAACAAAATGTGGCGAAGTGTTTTCTTGGCCCGGTGGAAGTATCACTTTAATATGTGCCTTTTGCAACGACGAGTTTGACGATATACTATTATTCGGGGATCATTTGGATGGCCAGgacaaatgcaaatttttgacCGCTAATGATGATCATACAGGAGTGGGCGAATTACCGATTAATGACGAGCATGGACAGGAATTGGACTCTGTAGCAGATGTCGACGAAAAAGAAGTGAAGCCAATACAACGCCAAAGGGGAAAATTCACCTGCCTTTCGTGTAGCCAACAGTATAATACTCAGCGGGGACTTGAACGGCATCAATCTTTATCACGATGCGGGTCAGCCACGAACGAACTTCCCGGCGGCGAGCCCCTACGAAAATCGAGAAGAATTGAGGGTGGCGCATGTGGTGAGCAGACAAGACAGGAGTTCCAAACCGAAAAGTTATCTGATCTGGTAAGCCAACTAAGCTGTGATGCTGCTATAGATTCAGTCAAGAATTCGAAAGAAGAACATCGAGGTGACACCCCCACCCATGAAGAGTGTAACGAAGGCATTGTTAGAGCCACATCTGAGAACGGCGATAAAGAAGAGAAACTATTTCCATGCAATTTTTGCGATCGAGTGTATAAAAACAAGAGAAGTTTATGGCGTCACATGCGAAAACCCCATAGAGGTGTTGACAAGGAGAGCGCTGGAGATCATTGGTTTTGTAGCCCATGCAATAGACCGCTAACCAGTAGACGGGCACTGCAACAGCATCAGAAGAGGCATGGTGCTGACGAGAAGGAATTGAGGCAGCCATCAACGGGCAGTGTGTATCATTGTGAAATATGCAATACTAATTTCAACAAGAAATCGGAACTACAAATTCACTCCGACATTCACGACGCTCTACCTGCCGCATTGCAAGGAAATCTTGACTTTTTACGATGCAAGTACTGCAATATTCAATTTCCAAAGTGTGCCCGTGTACTGGAGCACGAGAGTGCGCACACTGAAGACCGCCCATACCAGTGTGCTTACTGCAAAAAGGGCTTTGCCACCAACGTCGACCGCAAACTACACATTCGTTCGCACGCGAGCCAGGATCGCTATGAGTGTCCGCACTGCTCGAAAGTTTTTACAAATAAAACGGACGTGAAACGACATATTGAGCGTCATTTGAACACGCGAAACTACGGCTGTGAGTTGTGCGATAAACGCTTCTATCGTCCGTTCGAATTGACGCGACACATGCGAACGCACACAAAAGAACGACCGTACGTATGTGAAGATTGTGGTGCTACTTATCCGATTCTGGCACAGCTCAAAGACCATCAGTTGCGTCATACGGGCGTAAAGAATGTTAAATGCGAAATTTGCGGAAGGTTGTTCTATTCAAAGAGTGTGCTTAAGGTGCACATGCCAACGCACTTTGACGAGCAACCGTTCGAATGCAATGTTTGTGGACGAAAATTCTCGCGAGCGAAAGCCTTGCATAAACATCAGAAATTACATTCGGACGTGAAACGTTATGTTTGTAATATTTGCGGTAAGGCCTATGCACAAGATTCGGGATTATATGCACATAAGAAAACACATGGAGCGAATGTTGGGTAG
- Protein Sequence
- MDNTISPKKEVLSGEIKEEIPSDLFDNRTKCGEVFSWPGGSITLICAFCNDEFDDILLFGDHLDGQDKCKFLTANDDHTGVGELPINDEHGQELDSVADVDEKEVKPIQRQRGKFTCLSCSQQYNTQRGLERHQSLSRCGSATNELPGGEPLRKSRRIEGGACGEQTRQEFQTEKLSDLVSQLSCDAAIDSVKNSKEEHRGDTPTHEECNEGIVRATSENGDKEEKLFPCNFCDRVYKNKRSLWRHMRKPHRGVDKESAGDHWFCSPCNRPLTSRRALQQHQKRHGADEKELRQPSTGSVYHCEICNTNFNKKSELQIHSDIHDALPAALQGNLDFLRCKYCNIQFPKCARVLEHESAHTEDRPYQCAYCKKGFATNVDRKLHIRSHASQDRYECPHCSKVFTNKTDVKRHIERHLNTRNYGCELCDKRFYRPFELTRHMRTHTKERPYVCEDCGATYPILAQLKDHQLRHTGVKNVKCEICGRLFYSKSVLKVHMPTHFDEQPFECNVCGRKFSRAKALHKHQKLHSDVKRYVCNICGKAYAQDSGLYAHKKTHGANVG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00322759;
- 90% Identity
- iTF_00322759;
- 80% Identity
- iTF_00322759;