Cfor029973.1
Basic Information
- Insect
- Chloromyia formosa
- Gene Symbol
- -
- Assembly
- GCA_964017055.1
- Location
- OZ024817.1:21864860-21866359[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 3.1e-06 0.0021 18.9 0.0 1 43 17 59 17 60 0.92 2 3 5.5 3.7e+03 -1.1 0.0 13 22 131 140 131 143 0.88 3 3 0.76 5.1e+02 1.7 0.1 12 25 138 151 135 151 0.78
Sequence Information
- Coding Sequence
- ATGCCGacgcattataaaagaaaaggAAACGCAAAAAGGGCTCAGTGGagcgaagaaaatttgaaggAAGCATTACAAAAGCTACGGCGCGGAGAAATAAAATTTAGACAAGCTGAGCGCATCTATCAAATACCGGCACAAATGCTAAAACGAAGGTTGAATTCAGGAAATTCGAGAAAAGGCTCACAGGGTCCAGCAAGTTTATTTGGAGAAACCaacgaaaaaaaacttgtcgCTCACATTAACAAGCTTTCGGCTGCAGGTTTCGCACCAGACAGAAAAACTGTTCGTAAAATTGCTTATCGGTTTGCCGAAGAACTTGGAGTTGCTCACAAATTTAATAAAGATAAACAAACTGCTGGATATGATTGGTTAAATTCCTTTTTAAGGCGGAATAAAGAACTCAGTATTTGCCAAGCAGAAGGCTTGTCGGTTGCTAGGGCTCAAAGAATAAACCGAGAGAGTGTAGATGCCTTCTTCGCATTGCTAGAGAAAGTCGTTCAAGAGAATGACCTCTTCGATAAGCCTAGTAACATATTCAATATGGATGAAAGTGGTGTACAGGCTAACAATAAACCAGACGCAGTTATAACACAAAAAGGGTCGAAAGGCGTTCATGTGTTGACATCTGGTGAAAAGGGGGAAACTGTGACAGTCGTAGGGTGCTGTAATGCTGCCGGCCAGTTTTTACCGCCTGTCTTAATCTTCAAAggagtgaataaaaaaaaggaattcgaAGATGGCCTTCCTCCTGGATCTCGTGTGTACATGAATCCGAAATCTGCCTACATAAGCACTGAGTTGTTTATCAGATGGCTTACAGAACATTTTTTACCTCAAAAACCACCAGGaaaagtaattttaattttggatgGACACGCCAGTCACTGCAGCTCGCCCCTATTGCTCGAAACAGCCTACGAAAATGGGGTCGTCCTTCTTTGTTTGCCAAGCCATTGCACTCATGCTTTGCAACCGCTAGACAGGTGTTTCTTTGGgccgtttaaaaattattttaagactGAAGCTGCCAGTTGGATGAAACACAACTCACAACGACGCATCACCCGATATCAAATGGGGACACTTATTGGAGCAGCTTGGCGTAAAGCTGCTTCAGTGGATATTGCTGTTAGTGGGTTTAACTCTACAGGAATTTATCCACTGAACCCCAATAGAATTCCCGATCATTTTTACGCCATTTCTGACAGAGGAAAAGAGCACTCGATAGAGACCCACCTGGAGAATGATTCAGGCAATACCGCTGCAATGCCATCTACTTCGGGAACTACTTTCCAAAAGCGTTCCACATCATTCAACGAAGCAATGCCATCTACTTCGGGAGGTACTTCCCAAAGTGTCCAATTGTTTCAGAAAAGAGAGGATCTGCTACTGTATATTGCACATCATCTAACGAATCAGAGAATGATTTAG
- Protein Sequence
- MPTHYKRKGNAKRAQWSEENLKEALQKLRRGEIKFRQAERIYQIPAQMLKRRLNSGNSRKGSQGPASLFGETNEKKLVAHINKLSAAGFAPDRKTVRKIAYRFAEELGVAHKFNKDKQTAGYDWLNSFLRRNKELSICQAEGLSVARAQRINRESVDAFFALLEKVVQENDLFDKPSNIFNMDESGVQANNKPDAVITQKGSKGVHVLTSGEKGETVTVVGCCNAAGQFLPPVLIFKGVNKKKEFEDGLPPGSRVYMNPKSAYISTELFIRWLTEHFLPQKPPGKVILILDGHASHCSSPLLLETAYENGVVLLCLPSHCTHALQPLDRCFFGPFKNYFKTEAASWMKHNSQRRITRYQMGTLIGAAWRKAASVDIAVSGFNSTGIYPLNPNRIPDHFYAISDRGKEHSIETHLENDSGNTAAMPSTSGTTFQKRSTSFNEAMPSTSGGTSQSVQLFQKREDLLLYIAHHLTNQRMI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- iTF_00322374;
- 80% Identity
- -