Cfor015512.1
Basic Information
- Insect
- Chloromyia formosa
- Gene Symbol
- -
- Assembly
- GCA_964017055.1
- Location
- OZ024815.1:6857374-6859251[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.3e-07 0.00015 22.6 0.0 1 43 17 59 17 60 0.93 2 2 5 3.3e+03 -0.9 0.1 18 22 136 140 131 150 0.51
Sequence Information
- Coding Sequence
- ATGCCGacgcattataaaagaaaaggAAACGTAAAAAGGGCTCAGTGGagcgaagaaaatttgaaggAAGCATTACAAAAGCTACGGCGCggagaaataaaatttaaagaagCTGAGCGCATCTATCAAATACCGGCACGAACGCTAAAACGAAGGTTGAATTCAGGAAATTCGAGAAAAGGCTCACAGGGTCCAGCAAGTTTATTTGGAGAAACCaacgaaaaaaaacttgtcgCTCACATTAACAAGCTTTCGGCTGCAGGTTTCGCACCAGACAGAATAACTGTTCGTAAAATTACTTATCGGTTTGCCGAAGAACTTGGAGTTGCTCACAAATTTAATAAAGATAAACAAACTTCTGGATATGATTGGTTAAATTCCTTTTTAAGGCGGAATAAAGAAGTAAGTATTCGCCAAGCAGAAGGCTTGTCGGTTGCTAGGGCTCAAGGAATGAACCGAGAGAGTGTAGATGCCTTCTTCGCATTGCTAGAGAAAGTCGTTCAAGAGAATGACCTCTTCGATAAGCCTAGTAACATATTCAATATGGATGAAAGTGGTGTACAGGCTAACAATAAACCAGACGCAGTTATAACACAAAAAGGGTCGAAAGGCGTTCATGTGTTGACATCTGGTGAAAAGGGGGAAACTGTGACAGTCGTAGGGTGCTGTAATGCTGCCGGCCAGTTTTTACCGCCTGCCTTAATCTTCAAAggagtgaataaaaaaaaggaattcgaAGATGGCCTTCCTCCTGGATCTCGTGTGTACATGAATCCGAAATCTGCCTACATAAGCACTGAGTTGTTTATCAGATGGTTTACAGAACATTTTTTACCTCAAAAACCACCAGGAAAAGTAATTTTAATTCTGGATGGACACGCCAGTCACTGCAGCTCGCCCCTGTTGCTCGAAACAGCCTACGAAAATGGGGTCATCCTTCTTTGTTTGCCAAGCCATTGCACTCATGCTTTGCAACCGCTAGACAGGTGTTTCTTTGGgccgtttaaaaattattttaagactGAAGCTGCCAGTTGGATGAAACACAACTCACAACGACGCATCACTCGATATCAAATGGGGACACTTATTGAAGCAGCTTGGCGTAAAGCTGCTTCAGTGGATATTGCTGTTAGTGGGTTTAACTCTACAGGAATATATCCACTGAACCCCAATAGAATTCCCGATCATTTTTACGCCATTTCTGACAGAGGAAAAGAGCACTCGATAGAGACCCACCTGGAGAATGATTCAGGTAATACCGCTGCAATGCCATCTACTTCGGGAACTACTTTCCAAAAGCGTTCCACATCATTCAACGAAGCAATGCCATCTACTTCGGGAGGTACTTCCCAAAAGTGTCCAATTGTTTCAGAAAAGAGAGGATCTGCTACTGTATATTGCACATCATCTAACGAATCAGAGAATGATTTAGATCTTACTCCCGGAAAAGTTTTATCACAGATTTCTCGAGTACCGAAACTACATGAAAAGAAGGCTCATGCCAGAAGGCAGCTGGCATGCGTCCTTACTGacagaaataatattaaaaagaaaaagctGAAAGAAGCTAAAAATAATGCAAAGCGGCAAAAGATAAGTAACAAACAACCAAAGAAAAATCATAGTGGAGCTAATGCCAATCTCAACCGCTGTTGTGAATGTTTCGAAAACTATTACGGAACTAAAAAGAAAGATGACTGGGTGGAGTGtatgatgtgcaaaaagtggttcCACGAGTCCTGCTCCCTTTACAATGGGAAATGCGTCGACTGCGGCCGATTAGTTATaaggaaaagaaacaaaaactaa
- Protein Sequence
- MPTHYKRKGNVKRAQWSEENLKEALQKLRRGEIKFKEAERIYQIPARTLKRRLNSGNSRKGSQGPASLFGETNEKKLVAHINKLSAAGFAPDRITVRKITYRFAEELGVAHKFNKDKQTSGYDWLNSFLRRNKEVSIRQAEGLSVARAQGMNRESVDAFFALLEKVVQENDLFDKPSNIFNMDESGVQANNKPDAVITQKGSKGVHVLTSGEKGETVTVVGCCNAAGQFLPPALIFKGVNKKKEFEDGLPPGSRVYMNPKSAYISTELFIRWFTEHFLPQKPPGKVILILDGHASHCSSPLLLETAYENGVILLCLPSHCTHALQPLDRCFFGPFKNYFKTEAASWMKHNSQRRITRYQMGTLIEAAWRKAASVDIAVSGFNSTGIYPLNPNRIPDHFYAISDRGKEHSIETHLENDSGNTAAMPSTSGTTFQKRSTSFNEAMPSTSGGTSQKCPIVSEKRGSATVYCTSSNESENDLDLTPGKVLSQISRVPKLHEKKAHARRQLACVLTDRNNIKKKKLKEAKNNAKRQKISNKQPKKNHSGANANLNRCCECFENYYGTKKKDDWVECMMCKKWFHESCSLYNGKCVDCGRLVIRKRNKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00322378;
- 90% Identity
- iTF_00322374;
- 80% Identity
- -