Cfor002426.1
Basic Information
- Insect
- Chloromyia formosa
- Gene Symbol
- PPAF3
- Assembly
- GCA_964017055.1
- Location
- OZ024813.1:51782163-51793380[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.4e-09 3e-06 28.0 0.0 1 43 17 59 17 60 0.94 2 2 6.6 4.5e+03 -1.3 0.0 18 22 136 140 131 150 0.51
Sequence Information
- Coding Sequence
- ATGCCGacgcattataaaagaaaaggAAACGTAAAAAGGGCTCAGTGGACCGAAGAAAATTTGAAGGAAGCATTACAAAAACTACGGCGCGGAGAAATGAAATTTAGAGAAGCTGAGCGCATCTATCAAATACCGGCACGAACGCTAAAACGAAGGTTGAATTCAGGAAATTCGAGAAAAGGCTCACAGGGTCCAGCAAGTTTATTTGGAGAAACCaacgaaaaaaaacttgtcgCTCACATTAACAAGCTTTCGGCTAGAGGTTTCGCACCAGACAGAACAACTGTTCGTAAAATTGCTAATCGGTTTGCCGAAGAACTTGGAGTTGCTCACAAATTTAATAAAGATAAACAAACTGCTGGATATGATTGGTTAAATTCCTTTTTAAGGCGGAATAAAGAAGTGAGTATTCGCCAAGCAGAAGGCTTGTCGGTTGCTAGGGCTCAAGGAATGAACCGAGAGAGTGTAGATGCCTTCTTCGCATTGCTAGAGAAAGTCGTTCAAGAGAATGACCTCTTCGATAAGCCTAGTAACATATTCAATATGGATGAAAGTGGTGTACAGGCTAACAATAAACCAGACGCAGTTATAACACAAAAAGGGTCGAAAGGCGTTCATGTGTTGACATCTGGTGAAAAGGGGGAAACTGTGACAGTCGTAGGGTGCTGTAATGCTGCCGGCCAGTTTTTACCGCCTggagtgaataaaaaaaaggaattcgaAGATGGCCTTCCTCCTGGATCTCGTGTGTACATGAATCCGAAATCTGCCTACATAAGCACTGAGTTGTTTATCAGATGGTTTACAGAACATTTTTTACCTCAAAAACCACCAGGaaaagtaattttaattttggatgGACACGCCAGTCACTGCAGCTCGCCCCTATTGCTCGAAACAGCCTACGAAAATGGGGTCATCCTTCTTTGTTTGCCAAGCCATTGCACTCATGCTTTGCAACCGCTAGACAGGTGTTTCTTTGGgccgtttaaaaattattttaagactGAAGCTGCCAGTTGGATGAAACACAACTCACAACGACGCATCACTCGATATCAAATGGGGACACTTATTGGAGCAGCTTGGCGTAAAGCTGCTTCAGTGGATATTGCTGTTAGTGGGTTTAACTCTACAGGAATATATCCACTGAACCCCAATAGAATTCCCGATCATTTTTACGCCATTTCTGACAGAGGAAAAGAGCACTCGATAGAGACCCACCTGGAGAATGATTCAGGCAATACCGCTGCAATGCCATCTACTTCGGGAACTACTTTCCAAAAGCGTTCCACATCATTCAACGAAGCAATGCCATCTACTTCGGGAGGTACTTCCCAAAAGTGTCCAATTGTTTCAGAAAAGAGAGGATCTGCTACTGTATATTGCACATCATCTAACGAATCAGAGAATGATTTAGATCTTACTCCCGGAAAAGTTTTATCACAGATTTCTCCAGTACCGAAACTACATGAAAAGAAGGCTCATGGCAGAAGGCAGCTGGCATGCGTCCTTACTGACAGAAATAATATTAAAGAGAAAAAGCTGAAAGAAGCTAAAAATAATGCAAAGCGGCAAAAGATAAGTAACAAACAACCAAAGAAAAATCATAGTGGAGCTAATGCCAATCTCAACCGCTGTTGTGAATGTTTCGAAAACTATTACAGAACTAAAAAGAAAGATGACTGGGTGGAGTCATCTGGCAGGCTAACCTATCGTTGTGCAGGATCTGTTATAAGCGATCGCTAcattgtcacagcagcccattgTGTAACAAATCTCGTGAGTTCTCTTGAAGTATTTCTCGTGAGAATCGGCGAATTGGATATCAAACGGAGTCTCGACTGTGAACTGAATCCTTTGACGTGTGTCGTACCGCAAGACTATGATATTCAAAAAATCACCTCGCATGAAAATTACGATACACCTAAATATGCAAATGATATTGCTCTAATAAAATTAGTGCGACCGTTGAATGCATCTCGAATTACACCAATTTGCTTACCTGTTGGAGAATTGGCCAATGCCGATAAACGATTAACCGGTCAATCTGGAATTATTGCTGGATGGGGATCGAAAATTGCAGGTGGCGTCCGTCAGAATCCAGCTCTTCAATATGTAATACTGCCAATCATAAATCAAAGTTCATGTGCCGCTTCCTATGCTCAATTCAGTGCCAATTCCCGCTCTCCCATAATTGTGACAGATTCACAAATTTGTGCACAAGGAATGGAAAATATGGACGCATGTCAAGGCGATAGTGGTGGTCCGCTTATGATTGAAGGTCCAAACACGAATTCTCGGTTCACATTGTTGGGTCTGGTCTCATTTGGCCCGCGTACTTGCGGTGTATCCAACTTCCCGGGAGTATATACGAGAATTTCATCGTATCTGGATTGGATAGCTACAAACATGGATTAA
- Protein Sequence
- MPTHYKRKGNVKRAQWTEENLKEALQKLRRGEMKFREAERIYQIPARTLKRRLNSGNSRKGSQGPASLFGETNEKKLVAHINKLSARGFAPDRTTVRKIANRFAEELGVAHKFNKDKQTAGYDWLNSFLRRNKEVSIRQAEGLSVARAQGMNRESVDAFFALLEKVVQENDLFDKPSNIFNMDESGVQANNKPDAVITQKGSKGVHVLTSGEKGETVTVVGCCNAAGQFLPPGVNKKKEFEDGLPPGSRVYMNPKSAYISTELFIRWFTEHFLPQKPPGKVILILDGHASHCSSPLLLETAYENGVILLCLPSHCTHALQPLDRCFFGPFKNYFKTEAASWMKHNSQRRITRYQMGTLIGAAWRKAASVDIAVSGFNSTGIYPLNPNRIPDHFYAISDRGKEHSIETHLENDSGNTAAMPSTSGTTFQKRSTSFNEAMPSTSGGTSQKCPIVSEKRGSATVYCTSSNESENDLDLTPGKVLSQISPVPKLHEKKAHGRRQLACVLTDRNNIKEKKLKEAKNNAKRQKISNKQPKKNHSGANANLNRCCECFENYYRTKKKDDWVESSGRLTYRCAGSVISDRYIVTAAHCVTNLVSSLEVFLVRIGELDIKRSLDCELNPLTCVVPQDYDIQKITSHENYDTPKYANDIALIKLVRPLNASRITPICLPVGELANADKRLTGQSGIIAGWGSKIAGGVRQNPALQYVILPIINQSSCAASYAQFSANSRSPIIVTDSQICAQGMENMDACQGDSGGPLMIEGPNTNSRFTLLGLVSFGPRTCGVSNFPGVYTRISSYLDWIATNMD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -