Cfor005304.1
Basic Information
- Insect
- Chloromyia formosa
- Gene Symbol
- -
- Assembly
- GCA_964017055.1
- Location
- OZ024813.1:107555312-107556532[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.9e-11 5.3e-08 33.6 0.0 1 44 17 60 17 61 0.95 2 2 9.6 6.5e+03 -1.8 0.0 20 27 369 376 365 376 0.87
Sequence Information
- Coding Sequence
- ATGCCTTTAATATACAAACGAAAGGAAAATTCGAACCGAGCTAAATGGACGGAAGCAGATTTAAGGGCGGCAATAGCCGATGTCCAAAGTAAGGAATTAAGTATTAATAAAGTTTCGGCTTTATTCAAAATTCCTGGAACTACTTTAAGAAGACATCTGAAAGCGCACAATGACAAAAAGCCGGTGTTAGGTGGGCCTTGCTGTCTAGGAGAACGAAACGAAATCAAACTAGTTGCCCATATAAAGAAACTGCAGGCTCATGGATTCGCTCCATCAAGGCAAGAGGTATGCCGCATGGCGTACGAATTggcggaaaaatataaaataaaacacacgtTTAATCACGATGAAATGAAAGCTGGATACGGTTGGCTTAGCCTTTTTATGAAGCGGCATCCCGAATTATCAATTCGAAAGTCTGAAGGTGTTTCTCAAGCAAGAGTCGAAGGTTTAAGCAAGGAAGCAGTTTCAAACTATTTCCAGCTTTTGGAAAAAACACTCAGCGAAAACGATTTGATGGATAAGCCCGGTCATATATATAACATGGATGAGACTGGGTGCCAACTTAATAACCGTCCTGGACACGTCATTGCTGAAAGGGGTTCAAAAAATGTAGTTGCTGTAACTTCTGCTGAAAAAGGTGAAACGATAACCGTAATAGCCTGCTGTAATGCAGAAGGTAACTTTATTCCGCCAGCATGTGTTTTTAAAGGCAAAAATAAGCGAGCAGAATTCGAAGATGGAATGCCTCCTGgatcagtcgttttcatgggccTTAAATCTGCTTATGTAAACGCAAATTTGTTTTTGGCGTGGCTCAAAGAACATTTTGTACCGAGAAAGCCACAAGGGAAAGTACTGCTTATTTTAGATGGCCACTCATCTCACTGCACTAGCGTGGAAATGTTAGAATATGCTTCTGCAAATGATATCATATTGTTATGCCTACCACCTCACACTACGCAGTTCCTACAGCCATTAGACAGGGTGTTTTTTAAAGCgtttaaaaattacttttatgaaGCATGCAATTTGTTCATGAAAACCAATCCTACGCGAAAAATTAACCGCTTAAAATTCGGAAGCATATTATCTGTTGCATGGAGCAAAGCAGCAACAGTCTATAATGGGGTTGTTGCATTTTCTGCGACTGGAATTTTCCCGTTCAATCCTAATGCTATTCCCGATTATGCATTTATAAGCTCTAACTGCCCCCAATGA
- Protein Sequence
- MPLIYKRKENSNRAKWTEADLRAAIADVQSKELSINKVSALFKIPGTTLRRHLKAHNDKKPVLGGPCCLGERNEIKLVAHIKKLQAHGFAPSRQEVCRMAYELAEKYKIKHTFNHDEMKAGYGWLSLFMKRHPELSIRKSEGVSQARVEGLSKEAVSNYFQLLEKTLSENDLMDKPGHIYNMDETGCQLNNRPGHVIAERGSKNVVAVTSAEKGETITVIACCNAEGNFIPPACVFKGKNKRAEFEDGMPPGSVVFMGLKSAYVNANLFLAWLKEHFVPRKPQGKVLLILDGHSSHCTSVEMLEYASANDIILLCLPPHTTQFLQPLDRVFFKAFKNYFYEACNLFMKTNPTRKINRLKFGSILSVAWSKAATVYNGVVAFSATGIFPFNPNAIPDYAFISSNCPQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00322351;
- 90% Identity
- iTF_00322351; iTF_00322363; iTF_00322356; iTF_00322357; iTF_00322360; iTF_00322361; iTF_00322358;
- 80% Identity
- -