Cfor032576.1
Basic Information
- Insect
- Chloromyia formosa
- Gene Symbol
- -
- Assembly
- GCA_964017055.1
- Location
- OZ024817.1:53897304-53899065[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.025 17 6.4 0.0 30 45 9 25 9 25 0.92 2 2 9.3e-19 6.2e-16 59.0 0.1 1 44 32 76 32 77 0.96
Sequence Information
- Coding Sequence
- ATGACAGAACATTTAGAAACATTAAGGGGAACTCTATACGGGAGGTGTAAGCGGGAAGGAATTGAACTATCAAGATCAAACCCTACTCCATGGTCCGAAGATGCAATGAATGAGGCATTGGTTGCTGTAAGAGTTGGTCACATGTCCATAAATCAAGCGGCTATACACTATAATCTGCCGTATAGTTCACTTTATGGTCGGTTCAAGCGGGGCAAGTACGATACATCATCTACCGTAACTTCAGGAAATAACATAGGAAATACTAGTAACATGGACCTAACGGAACATAGCCCTGAGAGTTCGCAATTTCATTATAGTCCAGGGCAAGCAAGTACGCATCACCAAACACAACATCATCTATCGCACCTATCTTGCCAAGCTCAGCTGCACATGAATCAACAAACACAACTTAATGACCATCAGCATCAACAACAGCAGCATGAAATATCGCAACcggcacaacaacaacatattcAACAACTTGACGTGGTGACTTCCAGTAGTCAAGTTCATTCACAGCCTGTTCAAATTCAATATAATAATCATAGCTCAATCGATAGAAGCTGA
- Protein Sequence
- MTEHLETLRGTLYGRCKREGIELSRSNPTPWSEDAMNEALVAVRVGHMSINQAAIHYNLPYSSLYGRFKRGKYDTSSTVTSGNNIGNTSNMDLTEHSPESSQFHYSPGQASTHHQTQHHLSHLSCQAQLHMNQQTQLNDHQHQQQQHEISQPAQQQHIQQLDVVTSSSQVHSQPVQIQYNNHSSIDRS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -