Cfor009387.1
Basic Information
- Insect
- Chloromyia formosa
- Gene Symbol
- fru
- Assembly
- GCA_964017055.1
- Location
- OZ024814.1:33756049-33768065[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.4e-12 9.5e-10 39.2 0.2 3 43 246 286 244 287 0.91 2 3 0.38 2.5e+02 2.7 0.0 28 38 317 327 298 333 0.91 3 3 1.7e-15 1.2e-12 48.6 0.0 2 40 351 388 350 390 0.95
Sequence Information
- Coding Sequence
- ATGCATCACCTGAAATGGATGACCCACGCCGATACCATCATGGAATTGCAACGCAGTCTTCAGAACGACGAATCGACCTGCGACGTTTGGCTAAGATCCGACAAAGGTGTCGTATTTCGGGCGCACCGTTTTCTACTGTGCTTCTGCAGCGACTACTTCAAGGAAATGTTGCGGGACGTTCCGCAGAATCAGGAAGCAACAATCATTGTACCGGAAGTGCGTCCGAGCATCTTAAAGACAATCTTGGACTTTATCTATTTGGGCGAAGTGGGCGTCGCGTCGGAGGACATGAGCGATTTTTTCAATGCTTTCAACTTGTTGGAAATCAAAAGTGGAATAAATTGCGAAAGACGTATTATCCCGAAATTGGAGTATCATCATAAGCAGTTGACTATTGAGCCGGTGGAAGCGATTGAGATTGAAGTCCAGCAACATGGTGATGTGGACAAGCAAGAGGAATCAGATGGCATGCACCCGGAAAAAGATATGGAGTATCTCGAAGTCTACAGTTCGCACGCTCAGTACACGATTGAACAGCCAAGCAGCGATTATATTCTAGCGGAAAGTTCTGAGCCAACATTCGTTCTACCAGTCGAAAAATGTGAAACAGAAATTATCACGAGCGATGATCCGGACCCGGCTGAAACTTCAGAAATAGAGGAaggcaaatttaaaattttgaaaaccgAAAAGATTTTCAAGCCCAGCGATTTACACGAATTCGGATCACGTAGCGAAGCTTTCGAAGCGGCCGCCCAAGAAGTATTAAATTTGGGCGTGAGTTTACAAAAGGCCGCcacaaaatacaatatatcaaaaacagTTCTATGGCGTCGTGTACGCAAGAGTAGCTCCTATAAAATTGAACGCGAACACCCAATGCTAAAGACAGCCATAGAAATGTTAGAAAGTGGCGAATCATTGAAGGCAATCAGTCAAGCTATCAAAATACCAATATCTACACTACATCGACATAAAGTACGCCTACTAGAGGAAGGCCGACTTCCGGAACATGTTCGGGTCAAGCGTCGCGATTCGAAAGACAATCTCCGTGAGCGGATTGCGGATGCGATAAATGCTTGCGCACGGGGTATGTCGCAAAATCAGGCTTCAGTTGTCTATTCGGTGCCGAAATCAACGTTGTGGCGACATTTACAAAAGCACACTTGCCCCGTGCAAGTACAAGTAATGGACAGTGGACAAATTGACAATCAAATTATTGGCGATATTTCGTCTTCTAGTTAG
- Protein Sequence
- MHHLKWMTHADTIMELQRSLQNDESTCDVWLRSDKGVVFRAHRFLLCFCSDYFKEMLRDVPQNQEATIIVPEVRPSILKTILDFIYLGEVGVASEDMSDFFNAFNLLEIKSGINCERRIIPKLEYHHKQLTIEPVEAIEIEVQQHGDVDKQEESDGMHPEKDMEYLEVYSSHAQYTIEQPSSDYILAESSEPTFVLPVEKCETEIITSDDPDPAETSEIEEGKFKILKTEKIFKPSDLHEFGSRSEAFEAAAQEVLNLGVSLQKAATKYNISKTVLWRRVRKSSSYKIEREHPMLKTAIEMLESGESLKAISQAIKIPISTLHRHKVRLLEEGRLPEHVRVKRRDSKDNLRERIADAINACARGMSQNQASVVYSVPKSTLWRHLQKHTCPVQVQVMDSGQIDNQIIGDISSSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00322679;
- 90% Identity
- iTF_00322679;
- 80% Identity
- iTF_00322679;