Cfor032582.1
Basic Information
- Insect
- Chloromyia formosa
- Gene Symbol
- -
- Assembly
- GCA_964017055.1
- Location
- OZ024817.1:53933290-53934468[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 7e-12 4.7e-09 37.0 0.0 1 39 186 225 186 229 0.92 2 3 9.7e-14 6.5e-11 43.0 0.1 2 39 241 278 240 281 0.94 3 3 3.7e-13 2.5e-10 41.1 0.0 1 30 295 324 295 325 0.97
Sequence Information
- Coding Sequence
- ATGCCAATATTACTTGAACATAACTCTGCACCAAATGGTGGAGAAGTTCGTATTAAATTCGAGACTCTTCGTTCTTTAGATCCCACCGAAAATCTTGATATAGACAATCACATAGCCCAGCACATCATTCAGAGACTAGACCAATCACCAATTGGTCAGATTCACAATGTGGCTTCATCAGATGAAACCAAAATATCTAACCAAATACTTCAAAACATCAAAACTGAACTCGTGGATAAACACCATCAGCATCACCTTCAATCGCAATCTCATCATCACTTGCAGCATCAACAAGGATCTCAGCATCTGAATCAACAGGATATATCAAACAACACTGTGATGGAAATTGATCCCAGTAACATAAAACACGAACCAGCAATGATTATTACTCCAGAAATAGTTAGCATGATGACAACGGGGAATATGGATATCTACAACTCTGATACTAGCGAAGATTCTTTGATGATTGCCAATGGCTCTCCTGATGAAAATAATGAGCCCCAATATACTAATCTTGACCAGCAAGATATAAAGCTTAATGGTCCGAAAACATGGACACCAGAAGATATGAACTCTGCATTAGAAGCTTTGAAAAACCATAATATGAGTCTTACCAAAGCTTCCGTTACCTATGGAATACCGTCTACAACTTTATGGCAGCGGGCTCATCGGTTGGGTATAGACACACCTAAGAAAGAAGGCGCTACAAAATCATGGAATGAAGAAGCGCTTAATAATGCCCTGGAAGCATTGAGAACTGGCCAGATATCAGCAAACAAGGCATCTAAAGCGTATGGCATTCCATCTTCAacattatacaaaattgcacgcCGGGAAGGTATACGCCTCGCCGCACCTTTTAATGCGGCACCTACTACATGGACTCCCGATGATCTGGAGCGAGCATTAGAAGCCATTCGATCGGGTCAAACCTCCGTTCAGAAAGCCAGCAGTGAATTTGGCATTCCAACAGGTATTTTTTTATAG
- Protein Sequence
- MPILLEHNSAPNGGEVRIKFETLRSLDPTENLDIDNHIAQHIIQRLDQSPIGQIHNVASSDETKISNQILQNIKTELVDKHHQHHLQSQSHHHLQHQQGSQHLNQQDISNNTVMEIDPSNIKHEPAMIITPEIVSMMTTGNMDIYNSDTSEDSLMIANGSPDENNEPQYTNLDQQDIKLNGPKTWTPEDMNSALEALKNHNMSLTKASVTYGIPSTTLWQRAHRLGIDTPKKEGATKSWNEEALNNALEALRTGQISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPDDLERALEAIRSGQTSVQKASSEFGIPTGIFL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -