Cv-a012894.1
Basic Information
- Insect
- Chloroclystis v-ata
- Gene Symbol
- nfxl1_1
- Assembly
- GCA_963691955.1
- Location
- OY829903.1:17518487-17520928[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 2 2.4e+04 -7.8 5.6 15 19 132 136 131 136 0.81 2 19 0.025 3e+02 2.0 0.2 4 10 167 173 166 174 0.96 3 19 2.4e-07 0.0029 18.0 15.7 3 19 184 200 182 200 0.95 4 19 4.2e-10 5.1e-06 26.8 12.8 1 19 235 253 235 253 0.98 5 19 0.55 6.6e+03 -2.3 0.9 6 10 278 282 277 282 0.90 6 19 2.6e-09 3.1e-05 24.3 11.1 1 19 288 306 288 306 0.98 7 19 0.0045 55 4.3 18.3 3 19 343 359 335 359 0.86 8 19 2 2.4e+04 -4.9 2.1 1 5 368 372 368 372 0.92 9 19 4.5e-07 0.0054 17.1 17.5 1 18 393 410 393 411 0.97 10 19 1.4e-08 0.00017 21.9 17.3 1 19 420 438 420 438 0.99 11 19 0.0002 2.4 8.7 7.9 9 19 486 496 484 496 0.90 12 19 0.002 25 5.4 8.6 1 12 506 516 506 516 0.96 13 19 0.4 4.8e+03 -1.9 3.4 14 18 545 549 545 550 0.85 14 19 0.34 4.1e+03 -1.7 0.1 8 12 566 570 565 570 0.80 15 19 0.1 1.2e+03 0.0 13.2 1 18 586 605 576 609 0.85 16 19 0.0027 33 5.0 14.4 4 18 619 634 617 635 0.81 17 19 2 2.4e+04 -4.3 2.0 9 13 641 645 640 645 0.73 18 19 0.49 5.9e+03 -2.2 5.0 8 18 664 677 663 677 0.88 19 19 1.1e-07 0.0013 19.1 16.1 1 19 677 696 677 696 0.96
Sequence Information
- Coding Sequence
- ATGGCGCGCCGCTACAAGGACGCGGCGGCGAAGCTGCAACAGAACGTTCAGAAACACCTCAAGGACATGGGCGAGCTGTCCTCGTCATCGGACGAGGAGCCCTGCGCCGCCGAAGTCCTGGAGGGCGTGTTCCGCGGCtacggcggcgccggcgccggcgcgctgCTCGACCGCACGCGCCACCTGCTGGACGAGGCGGGCAGCGGCCGCGCGCAGGCCTGCCTCATCTGCATCAGCTCCGTGAAGCGCGCGCACGCCGCGTGGTTCTGCGCGCACTGCCACTGCGCCTTCCACCTCGCCTGCATCCAGAAGTGGGCCGGAGACAGCGTGGGGCCGCGCGCCGAGCCGGCCGCGGCCGTGCGGCTGCACCGCGCGCCGCAGCTCGAGTGGTGCTGCCCCAAGTGCCGCACCGCCTACGGCAAGGAAGAGATCCCGCGCCGGTACCGCTGCTGCTGCGGGCGCGCCGAGGACCCGCCAGCGCACCCTTGGCTGCTGCCGCACACATGTGGGGATGTATGCGGCAAGCGGCTGTCGGGCGGCGCAGGCTGTCAGCACCGCTGCCTGCTGCTGTGCCACCCGGGCCCGTGCCCGCCGTGCCCGCAGACCGTCGACGGAGTCTGCCACTGTGAGAAGGAACGGAGGAGGGTTCGGTGCAGCGCGGCCGAGTGGTCGTGCGGCCGGCGGTGCGAGAAAACTCTGCAGTGCGGGACGCACAGCTGTGAACTGATCTGCCATGAGGGAGATTGTCCTCCATGCTCCTACACCAGTCTCCAACCATGCTTTTGCGGTGTGGAGAGGACTAAAAGACCATGCGCTGACCCTTTCTGGCATTGTGAGAAGCCATGCCTGAAACCTTTATCTTGTGGCTACCATAAATGTGACCAAGTCTGTCATGCTGGCAACTGTGAGGATTGCCCCAACTCGGGTATGAGGTCCTGCCCCTGTGGAGCTAATGAGAGATATGTGCAGTGTCCTGACACCATGGAAACCTGTCTCGGAACTTGTGGGAAGATGCATGAGAAGTGCGAGCATGGCTGTCCTGAGAAATGCCATAAAGCAAACTGTCCTCCATGTCAGGTCATGACTGAGAAAAAATGTCAATGTGGAGGTCACACCCGGTTCCTGCCGTGCAGCAAGGAGTACAAGTGTGACACAAAGTGTAGAGGCACCAGACCATGTGGCAAACACAACTGTGCTAAGAAATGCTGCAACGGCAACTGTCCTCCTTGCGAGAAGGTGTGCGACAAGCCACTGCAGTGCGGGCGCCACAAATGCACCACGGTCTGCCACCACGGACCCTGCTACCCGTGTCCACTAGAGTCCAAGGTGACCTGCAAGTGCAAGGAAACTTACGTTTTAGTCCCCTGCGGGAGAGAACGCTCCACCAAACCACCAAAATGTAGCCTTGTGTGCAAGAGCAAATACAAGTGTGGACATttagaagaaaataaacatcCATGCCACTTCGGAGATTGTCCTCCTTGCAAGGCCGTCTGCTACAAAACGTACCCGAGGTGCGGCCACGAGTGCAAGGCGACATGTCACGAATATAAAGCTGTCGTTTTCAAGCAGATCGAGAAACCCGCCACTCCCTGGGATATACAGCCTCCGAAGACTAAGATAATGACATTGGAGTGTCCGCCTTGCGACGCGCCCGTCCCCGTGGTCTGCTTCGGCGAGCACGAGACGGAGGCGCGGCCCTGCCACTCGAGCGCGCGGCGCGGCTGCGGGCGCCCCTGCGGCCGGGGGCTCCCCTGCGCGCGCCACGCCTGCGAGCTGCCGTGCCACCTGCCCGCGGCCGGCTGCGGGCCCTGCGACCGCGCCTGCGCCCTGCCGCGGCCCGCGCGCTGCGCCCACCGGTGCGCGGCCGGCGGCTGCCACCCCGGCGCCTGTCCGCCGTGCGAGGCCGTGGACCGCGCGCCGTGCCACTGCGGCGTGACGCAGCTGTACCTGCGCTGCCGCGAGCGCTGCGCCGCCGAGGACGACGCCGCGCTGTGCTGCGGGCAGCAGTGCCCGAGGAACCTGCCCTGCGGCCACCGCTGCAAGGCGCCGTGCCACCCCGGACCCTGCCCCGACCGACCCTGCACCAGGAGAACCAAGGTGCACTGCGCCTGCGGGAACCTGCGCAAGGAGGCGCCCTGCGACGCCGTCCGCAGCGGCGCCGCCGACCTCCCCTGCGGCGACTCGTGCCGCGACAGGCGGGCCGCCGCGGAGCTCGAGAGAGACAAGGAGCGGCAGAGGTTGAGGCAGCTGGAGGAGGAGAAGAACAGGAAGGAGCTGGCCGAGTACGAGTGGAAGCTCAGcgggaagaagaagaagtataAGGAAAAGAAGGTTGTGATGGACGAGGGCGAGAGGCACTGGCTGTGGAGACATTGGATGGTTGTGGTGGCAGCTCTGGTCCTCATTGGTGCGACTGTTTACTGCAGCTACTGCATTTAG
- Protein Sequence
- MARRYKDAAAKLQQNVQKHLKDMGELSSSSDEEPCAAEVLEGVFRGYGGAGAGALLDRTRHLLDEAGSGRAQACLICISSVKRAHAAWFCAHCHCAFHLACIQKWAGDSVGPRAEPAAAVRLHRAPQLEWCCPKCRTAYGKEEIPRRYRCCCGRAEDPPAHPWLLPHTCGDVCGKRLSGGAGCQHRCLLLCHPGPCPPCPQTVDGVCHCEKERRRVRCSAAEWSCGRRCEKTLQCGTHSCELICHEGDCPPCSYTSLQPCFCGVERTKRPCADPFWHCEKPCLKPLSCGYHKCDQVCHAGNCEDCPNSGMRSCPCGANERYVQCPDTMETCLGTCGKMHEKCEHGCPEKCHKANCPPCQVMTEKKCQCGGHTRFLPCSKEYKCDTKCRGTRPCGKHNCAKKCCNGNCPPCEKVCDKPLQCGRHKCTTVCHHGPCYPCPLESKVTCKCKETYVLVPCGRERSTKPPKCSLVCKSKYKCGHLEENKHPCHFGDCPPCKAVCYKTYPRCGHECKATCHEYKAVVFKQIEKPATPWDIQPPKTKIMTLECPPCDAPVPVVCFGEHETEARPCHSSARRGCGRPCGRGLPCARHACELPCHLPAAGCGPCDRACALPRPARCAHRCAAGGCHPGACPPCEAVDRAPCHCGVTQLYLRCRERCAAEDDAALCCGQQCPRNLPCGHRCKAPCHPGPCPDRPCTRRTKVHCACGNLRKEAPCDAVRSGAADLPCGDSCRDRRAAAELERDKERQRLRQLEEEKNRKELAEYEWKLSGKKKKYKEKKVVMDEGERHWLWRHWMVVVAALVLIGATVYCSYCI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -