Cv-a009367.1
Basic Information
- Insect
- Chloroclystis v-ata
- Gene Symbol
- -
- Assembly
- GCA_963691955.1
- Location
- OY829901.1:9358106-9362379[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 4.1e-06 0.00028 21.6 1.6 2 23 140 161 140 161 0.96 2 7 4.2 2.9e+02 2.6 0.2 1 7 167 173 167 176 0.91 3 7 0.00019 0.013 16.3 0.2 3 23 194 216 193 216 0.89 4 7 8.4e-06 0.00058 20.6 1.0 1 23 222 244 222 244 0.98 5 7 0.033 2.3 9.3 0.1 1 17 250 265 250 271 0.72 6 7 0.0017 0.12 13.3 3.2 1 23 289 313 289 313 0.95 7 7 0.00043 0.029 15.2 1.9 1 23 319 342 319 342 0.96
Sequence Information
- Coding Sequence
- ATGGATCGCGAGAGCTTTGAAGAGACATGTCGCATCTGCCTGAGCGTTCAGAGGCCTGTGTTCTCGCTGTACAAGAGCCGgggcgggcgcggggcgcCTCGTGAGGTGCTGTGGCGTGTGGCGCGGCTGGCGACGCGGCCGGGGGACGGCGCGCCGCCGGGGCTGTGTGCCCGCTGCCTCCAGGACCTCGACACGGCTGAAGCCTTCCTCGACAGATGTGAGCGAGCTGCGCACTTGCTGCAGCGCTTTGTAAACCAGCAGTCGTCGCCCGCCGACGAGCCTGTTGCTGTCTCTGTCACACCCTTGCTACAGGACTCCTTGGATACAGTTGAGATCAGCGAAGACTTGAAGAGGAAATCATGTGACAAGTGCGGTGATAAGAAACCCTGCTCACACCGACCGACTGCAGGCAAACGAACATGTCCCTACTGTCAGAAGACCTTCACTAAGAAATACAACTACCAGATACATGTTGATCGGCACACAGGTGGAGGTACATTCCGCTGTCCCACATGTGGTGTCGAAGGCCTCTCCCGCTGGCGCGCCGCCGCACACTGCcggccgcccgcgccgcgcgcctgTCCTGCGCCGGCTTGTCTCAAGACCTTTACCAGCAATAACAACCTGCGGACGCACCTGCTAACTCACACTGGTGAGAAACCATTTGAATGCAACAAATGCGGGAAAAGATTCATCAGCAAAAATATCCTAGTCAACCATCTGAGGACACACACCGGTGTCCGTCCATACATGTGCGAGATATGCGGAGCTCGCTTCGCCACCAACAAGCTAGCCCTCCACCGCGCGACACACGCCTCCGCCTCCGCCACCGCGCCCGCCTCCGCCTCCGCTGCCGCTCGTCCGCACCGCTGTATGAATGGACACTGCGCTCGCGCTTTTCGTACGCCGAGAGACCTCAGAGAGCACTCGCGCACGCACAGCGCGTCGCGCGCCTTCCCGTGCGCGCGCTGCGGCGCCGCCTACAAGCACAAGCAGTCGCTCAGGAACCACGTGCGACATGCGCATGCGGACCAAGTGGGTCATCGGCCGTTGGTTTTTGCAGAGACCTTCACCGCGCCGCCTCGACCAACAGTGGCATTTCACGCACCACGGCGCGCCCAATAA
- Protein Sequence
- MDRESFEETCRICLSVQRPVFSLYKSRGGRGAPREVLWRVARLATRPGDGAPPGLCARCLQDLDTAEAFLDRCERAAHLLQRFVNQQSSPADEPVAVSVTPLLQDSLDTVEISEDLKRKSCDKCGDKKPCSHRPTAGKRTCPYCQKTFTKKYNYQIHVDRHTGGGTFRCPTCGVEGLSRWRAAAHCRPPAPRACPAPACLKTFTSNNNLRTHLLTHTGEKPFECNKCGKRFISKNILVNHLRTHTGVRPYMCEICGARFATNKLALHRATHASASATAPASASAAARPHRCMNGHCARAFRTPRDLREHSRTHSASRAFPCARCGAAYKHKQSLRNHVRHAHADQVGHRPLVFAETFTAPPRPTVAFHAPRRAQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -