Cv-a007086.1
Basic Information
- Insect
- Chloroclystis v-ata
- Gene Symbol
- -
- Assembly
- GCA_963691955.1
- Location
- OY829899.1:15049630-15052187[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 5.3e-05 0.0037 18.1 4.5 1 23 277 299 277 299 0.98 2 10 0.00068 0.047 14.6 1.1 1 23 374 397 374 397 0.97 3 10 0.0051 0.35 11.8 3.0 1 23 401 423 401 423 0.97 4 10 0.013 0.9 10.5 0.1 2 23 445 467 444 467 0.94 5 10 0.0079 0.55 11.2 0.1 2 23 518 540 517 540 0.93 6 10 3.9e-06 0.00027 21.6 1.5 1 23 550 572 550 573 0.96 7 10 0.028 2 9.5 1.6 3 23 590 610 588 610 0.94 8 10 0.016 1.1 10.2 0.8 1 23 616 638 616 638 0.95 9 10 0.41 28 5.8 1.7 1 21 644 664 644 668 0.90 10 10 0.00052 0.036 15.0 0.1 1 23 709 731 709 731 0.97
Sequence Information
- Coding Sequence
- ATGGATAAAGCTGAAGAAATAACAGACACCAATTTACCCATCAAAACTGAAGTATTCCAGACAAGTGATGATAGTATAATAAACGATGAAAACAATGTACAAATTAAACATGAGACTGAAGATAACACGGATGACAACCCCATGGAAAACCTacaaatagatataaaatatgaacaacCAATAGAAAAAGAACTGAGTATGGAGAATGAAAATGCACCTATTAAGATAGAATCTGAGGATTTAGGAAAAgaaatatctattattaatgttaaaaatgaGACAGCCGAAACTATTTTACCCAACGATGGAGAGGAAGCAATAAAAGAGAATATTGATGATGTGTCTGTGAAAGACGAGTTAGTGAATGATGTTGATAATGTTGTTGATTATGATTATCCTAATTTTGATGACAGTATGGACAGTAGCGAGGCTGCAGCATTAACCAAAGTTGAAGCTTGTTTGAGTGATGATATTCATATAAAATCTGAAGGCTatACTAAAGATGACGGTGAAACAGAAATGGCAGTAACGGAAACCCACATAATTACGAAGAAACTGATAAACACAACTTCAACCGTTACCAGTATGGAAGGCATCATAGAGTCGAGCACAACCAACACACTCGTCATGGAAATACAACCCATATCAAACGACCCAGCATTCAACAGAAACCCAGAAGAAATCCTACCAACTACAGATAACAACTACAAAATGGATTACGGTGAGAGTTTCCTACTTAATTCTATAACAGGGAATGTACTTTCGCTAGAACAAGAAGCTTACGGACTGTTGAAGAGCAAGAAGAAAGTCCCAATAGCCGAATACACTCATAAATGTCCAAAATGCATGAAATTGTTTCGTTCAAGTTACAATCTTAAGAAACATTTACGAGTTCATGAGAGTATCGAAAAGCGCGCGTTAGGTGTCATTAAAGGCATTAAGACTAAGCAGGAGAATCTTAAAAAACTCGATGACATTAAAGATGTGGAATTAGATGATAGTACAGTTACTGAAGAGAATGGTGATGGCTATAATTGTACTTGCGGAAAGATCTTCCAGAGACGCAGTAGAATGGAAACCTGCCTAAGATCTCACACAGAATTCTCCGAAGCTTCATTCTACGCGTGTCCAACGTGCCAGAAACAGTTCAAAGCGAAAGAAGCACTAATGTACCACAGAAATAAGTTTCACAGAAAGAAATTCCCCTGCAAATTCTGCCCCACAGACTACCACACGCAGAAAGAACTCTTCAAACATTTACAATTGCATCAGAAAGTACAACTTACCGACTACAAAGTCATCGCGGAAGTAGCTAAAGGGAAGCAGGAATTAAAGTGTCTAATCTGCACTAAATCCAGACCAACGCTGCCTGAACTCAAATCTCACATAATGGAAGATCATACGCCGCCTTACAGCTGCCAGTATTGCATCCACGATGTCTTCGCGAAAATCATGGATTTCGTGGATCATATAAAGAAATGTCACCCCGATGAAGGCTCTGAAGCAGTTCTGGACGTAATCACGGCGTTCTCTAGACTAGTTAAAGCTTGGAAATGCGAAGAATGCGGACAACAGTTCCACGAAGCTGATAAACTCGCGTTACACCAGATAGAGATACATCTACCTGAGATGAAAAATGAGCAACATTACCAATGCGAGGATTGCCAAAGAGTGTTCATTAGTAATCAAGGTTTAAACTCGCATAGACGCGTTCATCATAGAGTAGAAACATCCGAGCCTTCAGAACCGGAGGAAATCGGAGTGATGTGCCTAGCATGTCGGAAAATGTGTAAAGATATGACGGCTTTAACTTCACATATGAGATTGCATTCAATGGAACGCAAGTTTCCATGTAGATTTTGCGATTATCGATTCGCTACGCAGCAGAAGCGGAAAGCACACGCAGAGATTCATACGGGTGATATGAAATATGTCTGCTTTATTTGCGAGTATCAGTGTAGTTCTGAAAACCGTTTGAAAGTGCACAAAGCTTCAATAAAACACTTGAATATGAAGGAGTATTTGTTGACGGGGAAGCCTTTGGTTGAAGAGCCGGAACGCTccaaaaaagataaaaaagagCTGGGagttaaaaagaaaaagagaGATAGAGATGAATCGAACTTTGCTTGTGATATTTGCGGAGAGAAGTTTGAAGAGGAGAGTGCCATGCAGGAGCATAAACAAACACACCCTTTTATAGAGTTTCCTAACGATGACAAGCCTAGtaggatattttttaaataa
- Protein Sequence
- MDKAEEITDTNLPIKTEVFQTSDDSIINDENNVQIKHETEDNTDDNPMENLQIDIKYEQPIEKELSMENENAPIKIESEDLGKEISIINVKNETAETILPNDGEEAIKENIDDVSVKDELVNDVDNVVDYDYPNFDDSMDSSEAAALTKVEACLSDDIHIKSEGYTKDDGETEMAVTETHIITKKLINTTSTVTSMEGIIESSTTNTLVMEIQPISNDPAFNRNPEEILPTTDNNYKMDYGESFLLNSITGNVLSLEQEAYGLLKSKKKVPIAEYTHKCPKCMKLFRSSYNLKKHLRVHESIEKRALGVIKGIKTKQENLKKLDDIKDVELDDSTVTEENGDGYNCTCGKIFQRRSRMETCLRSHTEFSEASFYACPTCQKQFKAKEALMYHRNKFHRKKFPCKFCPTDYHTQKELFKHLQLHQKVQLTDYKVIAEVAKGKQELKCLICTKSRPTLPELKSHIMEDHTPPYSCQYCIHDVFAKIMDFVDHIKKCHPDEGSEAVLDVITAFSRLVKAWKCEECGQQFHEADKLALHQIEIHLPEMKNEQHYQCEDCQRVFISNQGLNSHRRVHHRVETSEPSEPEEIGVMCLACRKMCKDMTALTSHMRLHSMERKFPCRFCDYRFATQQKRKAHAEIHTGDMKYVCFICEYQCSSENRLKVHKASIKHLNMKEYLLTGKPLVEEPERSKKDKKELGVKKKKRDRDESNFACDICGEKFEEESAMQEHKQTHPFIEFPNDDKPSRIFFK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -