Cv-a012818.1
Basic Information
- Insect
- Chloroclystis v-ata
- Gene Symbol
- -
- Assembly
- GCA_963691955.1
- Location
- OY829903.1:16699138-16715946[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.0018 0.13 13.2 4.0 1 23 86 108 86 108 0.97 2 16 0.0005 0.034 15.0 2.7 2 23 140 162 140 162 0.97 3 16 0.0088 0.61 11.1 0.8 1 23 166 189 166 189 0.96 4 16 0.026 1.8 9.6 0.1 2 20 204 222 203 224 0.93 5 16 1.7 1.2e+02 3.9 2.7 2 23 248 270 247 270 0.88 6 16 0.19 13 6.9 2.8 1 23 311 333 311 333 0.93 7 16 0.00023 0.016 16.1 4.5 1 23 339 362 339 362 0.96 8 16 0.0061 0.42 11.6 3.9 1 23 510 533 510 534 0.96 9 16 1.6 1.1e+02 4.0 8.7 1 23 540 562 540 562 0.97 10 16 0.0032 0.22 12.5 8.2 2 23 594 616 593 616 0.97 11 16 0.0002 0.014 16.3 0.5 1 23 620 643 620 643 0.96 12 16 0.54 37 5.5 0.7 2 21 657 676 656 681 0.92 13 16 0.45 31 5.7 7.7 2 23 700 722 699 722 0.95 14 16 3.2 2.2e+02 3.0 0.1 3 20 745 765 743 767 0.63 15 16 0.00012 0.0085 16.9 0.3 1 23 770 792 770 792 0.98 16 16 1.7e-05 0.0011 19.7 1.7 1 23 798 821 798 821 0.98
Sequence Information
- Coding Sequence
- ATGACTGATATAAGGATTTGCCGCGTATGTCTTAGAAGAAACGTAAAGTTGTACCACCTAGaacagtttaatttaaaacattactaCGAAGAAATCGCTGTTAACAAGATGCAAGCTGAATCTCTACCTAAATGGTTATGTTACGAGTGTGCAGCATTATTGCACAAATACAACAAGTTCAAAGAGAAATGCATATACGGACAGAATACTTTGATGAACTTACTTGTTAAAGGATATTGCCATGATGGGGGTAAATTCGAATGTCGTTTCTGTCACATGCAGTTCAAACGCAAGTTTCAGCTCGGAAGGCACATGGTGGTTCACTACTATGTGTACCAGTGCTTACGATGTGACTTGAAGTGTAATCTATTGAGCACAGCAGCATTTCACGAAGACTCACATAACGGCGTTATACGAACCTGTAAAGACTGCGGCGAACAATTCAAGCACGTGTCAACATACTACACGCACCTGCGAATGTCGCACAGAAACTCACATATTTGCAAGTTGTGTGGCGCCAGCTTCGTCAGCGAGACGGGGCTCGAGTTCCACATGAAGCGGCAGCACTGCATCTCTGAAGATAACACTgaGCAACAGAACGCAAACATCTACTGTTCGAAATGCGACGTGTCGTTCGTGTCGTCGCGCGCGTTCTCGGAGCACCTCGCGCAGTCCGCGCTGCACGAGGACGAGCCGCCGCGCCGCAAGCGGAACCGCCGCGAGATCATAGAGAACGCTACTACGTGCCGATTCTGCCGCGAGAAGTTCACGACCCGCGCGGAGTGCCGCAAGCACGTGGCGGGCGAGCACCGCGGCGCGCGCTCCGGCGACCTGCGCGCGCAGGACCGCGTCATGTGCGAGATCTGCGGCGCCTGGCTAGCGGCTTCAAGCATAGAGGTTCACATGAATAGACACACAAAGAAGAAAGTGTTTCCTTGTCAATATTGCGGAAAGGAGTTCCTTTGCAAGTCTGGGTATAACACGCATCAAGcgaAACACACAGGCGTCAGGCCGCACGCTTGCAAGATCTGTCACAAACGGTTCTCTCAGAAATTTGCCATGGAAATACACTATAGAAGGGTACATCTCAAAGAACCCTATCCCAAAAGATTAACTAACTCAACAATCATGGAGGAAGACACATCAGAACTTGTTAGAATATGGAGGGAAAAAAAAATGGGTGGCACCATAGAACCACGGACAACAGAGGATAAGGCCCacaattttgtaaaacaaGAAAGTGCACCGGAAATGTTAAATCTAACACCTGTACATCCAGAAAGCCTACCTCATCAGCATATAGACCAGCGTCAAGATATTAGATACAACCAGCACTCAATATTCGGTATCTCCGGAACAGAACCTTTATGGATGCCACCAGATGATCCACCTCCTCCATCAGAAAAGAAAGCATCTAAAAGTTCCTTCCTTGATCCAACAAACTGGAGAAGATTGACTTTGAATGAGGATGAAgcaataattaagtttaataagCGAGCGAGTAATCCAAGGTTTACAAATGGGAGATTTAAATGCCATGAATGTTATTCTAACTTTGCGAGAGAAGAGAAATTGAATAAGCATGTTATGATTAATCATCATGAGAGTGCCGGACCCCACATGTGCAGGTTCTGTAAGCGACGGTTCCAGAAGCCGTGTAAGCTACGGATGCACGTCAAAAAGCATTATGTGCAGATTGAATGTTTGCGGTGCAGCATGCAGTTTGATGGAGAGGGGCTCGCATTTCAACATGAGGAGTTTCACAGAGGAGTGACAACTACTTGTAAATACTGCAATCATCAGTTCAGACACAAGTCGACGTACTACCAGCACCTGCGCACGCAGCACCGCAGCGCGCACATCTGCACGCTGTGCGGCGCCTCCTTCGTCAGCAAGGCGGGACTCAACGTGCACAAGAAACGACTGCACTCAGACAAGAACATGCCAAAAGAACCTGACGCCAATATCTACTGCCGCCGCTGCGATATCAAGTTCGCGTCGATGCAAGCCTACCAGGAACACTACCGGCACTCCGCTCTGCACGCCGACGGGGTCGATGTGTATGTGAACGATGATGTCAGAGGGGCCAACTACGTTCGCTGTACAGAGTGCCACGAGCAGTTCTTCACGTACCAGGCGTGCCTGAAGCACCACCGGCGGATGCACCCCGACACGCCCTTCATGAAGAAGTCCGTGGCCAGCCCGGCCGCCGCCAGCAACGAACGCGTCAACTGCGACATCTGCGGAGTCCTCATCAAGGCGACGAGTCTGTACACGCACATGAACGCGCACACGCGCACCAAGGTGTACACGTGCCAGGTCTGCGGCATGCAGTTCCCCTACCCCACCTCGCTGCTGCGGCACAAAGTGACGCACACCGGCGAGAAGAAATATCCCTGTCCGCTCTGCGAGAAGCGTTTCACTCAGCGGAACAGCATGCAGCTGCACTACCGGACCTTCCACCTCAAGGAGCCCTACCCCAAGAGGAACCGTCGGAAGAAGCCGGCGGAcccccccgcgccgcccgcccccgcgccaCACCCCCCCGCGCCGCACCCCCTCGCGCACCACCCGCACGTCTCTCTGCTTGGACTCTAG
- Protein Sequence
- MTDIRICRVCLRRNVKLYHLEQFNLKHYYEEIAVNKMQAESLPKWLCYECAALLHKYNKFKEKCIYGQNTLMNLLVKGYCHDGGKFECRFCHMQFKRKFQLGRHMVVHYYVYQCLRCDLKCNLLSTAAFHEDSHNGVIRTCKDCGEQFKHVSTYYTHLRMSHRNSHICKLCGASFVSETGLEFHMKRQHCISEDNTEQQNANIYCSKCDVSFVSSRAFSEHLAQSALHEDEPPRRKRNRREIIENATTCRFCREKFTTRAECRKHVAGEHRGARSGDLRAQDRVMCEICGAWLAASSIEVHMNRHTKKKVFPCQYCGKEFLCKSGYNTHQAKHTGVRPHACKICHKRFSQKFAMEIHYRRVHLKEPYPKRLTNSTIMEEDTSELVRIWREKKMGGTIEPRTTEDKAHNFVKQESAPEMLNLTPVHPESLPHQHIDQRQDIRYNQHSIFGISGTEPLWMPPDDPPPPSEKKASKSSFLDPTNWRRLTLNEDEAIIKFNKRASNPRFTNGRFKCHECYSNFAREEKLNKHVMINHHESAGPHMCRFCKRRFQKPCKLRMHVKKHYVQIECLRCSMQFDGEGLAFQHEEFHRGVTTTCKYCNHQFRHKSTYYQHLRTQHRSAHICTLCGASFVSKAGLNVHKKRLHSDKNMPKEPDANIYCRRCDIKFASMQAYQEHYRHSALHADGVDVYVNDDVRGANYVRCTECHEQFFTYQACLKHHRRMHPDTPFMKKSVASPAAASNERVNCDICGVLIKATSLYTHMNAHTRTKVYTCQVCGMQFPYPTSLLRHKVTHTGEKKYPCPLCEKRFTQRNSMQLHYRTFHLKEPYPKRNRRKKPADPPAPPAPAPHPPAPHPLAHHPHVSLLGL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -