Cv-a016674.1
Basic Information
- Insect
- Chloroclystis v-ata
- Gene Symbol
- ZIPIC
- Assembly
- GCA_963691955.1
- Location
- OY829906.1:14189281-14198761[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 4.4e-05 0.0031 18.3 1.3 1 23 279 301 279 301 0.99 2 14 3.2 2.2e+02 3.0 1.8 1 23 336 359 336 359 0.94 3 14 0.074 5.1 8.2 3.1 1 23 425 447 425 447 0.98 4 14 0.0028 0.19 12.6 2.0 2 23 456 478 455 478 0.96 5 14 0.00026 0.018 15.9 2.9 1 23 509 532 509 532 0.97 6 14 0.029 2 9.4 3.9 1 23 536 559 536 559 0.93 7 14 0.029 2 9.4 3.9 1 23 567 590 567 590 0.93 8 14 0.029 2 9.4 3.9 1 23 598 621 598 621 0.93 9 14 0.029 2 9.4 3.9 1 23 629 652 629 652 0.93 10 14 1.4 95 4.2 0.0 3 20 671 688 670 690 0.93 11 14 0.28 20 6.3 0.1 3 23 751 772 750 772 0.96 12 14 2.1e-05 0.0015 19.3 0.6 1 23 781 803 781 803 0.98 13 14 0.0095 0.66 11.0 1.3 3 23 811 831 809 831 0.96 14 14 2.5e-05 0.0017 19.1 2.6 1 23 837 860 837 860 0.98
Sequence Information
- Coding Sequence
- ATGTGGGACGTGAAGGCCTGTGCTGTGTGTCTCAGCACAGGCAGTACTCTTCACAGCCTAAACTCTGGTAATCTTAGAAATGAATTCAACTGTTTATCTGGCCTCAagacatcTAACACTGGCGGTATGCCGGACCATTTGTGTGTGGAATGCCTCTCCTATGTCAAGAAGTTCATGAAATTTAGGAAAAAGTGCCAACAGGCTAACTTTACTTTACAGCAATTAATGAATAGCAATAAAGAGataaaaaAGTTCCATCTGTTTTCCCTGGATAGAGAAAGACTAGGGCTCATGCCTTCCCTATCATTCCTGGAtgtaaaacaaacttactatGAAACTCAAGTTTACCAATGGCCAGAAGACCATATATGGCCCATAAACttaccaaaacaaaacataccaATAGTTCACTACACCACATTGACTAAGGAAGACACCTTTGAAGATGTCATAGCGAACTGCAATTCATTtgacaataaacaaacaataaaaatagaacatGATGCTACTGAATCTAAGAAAGAAATCAAAAAGTCTAAGAagaaaaaacatgaaaaaaaagcattaACTGATATAGCCTCTCTGTTACaagataaaaaatactctCTAGATTCCGATTATGTAGATGATAACTTTATGGAAGCAAATGATTTACATTTTGATAATGGATTAGATAATGATTTTGGTAATGAAGATCTGTTTGTTAATTCTTGTAAGTTAGATCTTAAGGCTGATGGTTCGAAGTTTAATGAAGAATATGCAGAAATGATTCCGATATCTGTGACGGAAGCTAAAGCAGtcatagaaataaagaaaatgtttaaacaAGGCCCATATAAATGTAAAGGATGTGGGCttgcatttaaaattaagaaatatttgaaaatacattcAAGAATGCATGATAAGCATCTGAAAGGAAACTACCACTGTGTTATTTGTAACTTTTACTACAAAACTCAGTTCCTATTGGACTGTCATATGACTGAAAAGCACATGTACAAATATGTCTGTAGATTGTGTCCTGAAGTCAGTTTTGATAGAACATCAGCCAAAACCCACTACTGTCTCCGGCACCTCGGCGGCCGCAACTGGGCCGGGCAGCAGCGCCCCGGCTGGCTCAAGCCGCGCAAGGAGCTGAAGCCCAAAGGGAGACGCAACACCGCCATCCCCATCCCCAAGGACGCCTTTTCCTGCGACCTGATACGACCCGAGGAACAGTATGCTATGATACAGgaACGTAAAACTAGTCGAAATTATCTAGAAGCGAAGTACAAATGCCAGTACTGCTTCCGAGGATACAGACTGATGACCACATATAACAACCACATGGTGAAACATGACCCGGAAATCTCAGGTAACCTCCAATGCGACATGTGCAAGTTATACTTCAGGGACCAGCGCAAGATGTATAAGCACATGAATATGTCCCATCTCTACAAGTTCAGCTGCAAGGCGTGCGCCGCCATCTTCACTTGCCGCAGCCAGGCGCTCGCGCACTACAAGTGGCACAAGAACGTCACTTACAGCTGCGACCACTGCGACAAGAAGTTTGTTAAGCCGTCGACGAGACTGACCCACATCCGTCTGAAGCACCCGTCCACGTTCGTGTGCCACCTCTGCGGACACAGCTTCGTCAGCTCCGCCGGACTCACCTGCCACAAACAGATCTCGCATCCTAAAGAGCACCCGTCCACGTTCGTGTGCCACCTCTGCGGACACAGCTTCGTCAGCTCCGCCGGACTCACCTGCCACAAACAGATCTCGCATCCTAAAGAGCACCCGTCCACGTTCGTGTGCCACCTCTGCGGACACAGCTTCGTCAGCTCCGCCGGACTCACCTGCCACAAACAGATCTCGCATCCTAAAGAGCACCCGTCCACGTTCGTGTGCCACCTCTGCGGACACAGCTTCGTCAGCTCCGCCGGACTCACCTGCCACAAACAGATCTCGCATCCTAAagagGACACTTCTGAAAACCAAGTACATGACGCCACGAACCCTAACTACTGCGTGGACTGCAACATTCTGTTCGCGAACGAACAAGCCTTCAACACGCATCTCGGCAGCTCTAGCAAACACGTCAAGACTAATATATCTGTTCAAATAACCCAACGCGATTCCCGCAAGCGAATGCGTCGTGAGATGGGCACCGGGCCGCgagccgcgcgcgcgctctCACTGCCCGTGGAGAGGAGACGTAACGGGACGTCCGACGTCCTCAACACCGGCGCCACCACCGCCAACAACTGCGAGATGTGCGGCAAGTACTTAGTGAACGACGTGCAAGCGAGACGGCACTACGAGACGGAACATCCCGGCTCGGACTATCTGCGGCGTTATATGTGTGAAGTTTGTGGACACACTGCTAgaCAATACGCGAACCTGCTGGTGCACATGCGAACCCACACTCGCGAGAAGCCGTACGGGTGTCCGCACTGCCAGCGACGCTTCAGCATGCTCAGCAACCGGGACAGACATCTCGTGGTCCACACGGGCGAGAAGCGGTTCCAGTGCCAGCACTGCAGCCGGCGCTTCACGCAGAGCAGCGCCGTGAAGCTGCACATACAGACCGTGCACCTCAAGATACCCTACGCGCCCTGGGACAAGAAGAACCGCAAGCGCAGAAAGGAGCTGGAAGCCGCCGGCGTCTCAGAGGGCTGCAGACGCTATGTTGTTCTGTTCCCGGAGCGAGGGCTATCAGGTCCCGCGGCAGGGGCCTCAGCGGGCCGGCGTGGTCGGGGGGAGGCCGTTCAGGTGGGCGTGGCGGCTGTTATCGGCGCAGGCGAACATTTGGCGCGCCGTCAGCGCCACGTGCTCCTCGATGGACGGCATCCGCAGGTCGCGGGCGCGGCCGCAACCTACGACGAGTCTTCTTTCAGGCCCCTTGCGAGGGCACCGAGAGAGGCTTCGAGGCTAGGCCTCTTTACCTCGGCTTCAACTCTAGGGGTAACGACCCCTAGGTCACGTGGATAA
- Protein Sequence
- MWDVKACAVCLSTGSTLHSLNSGNLRNEFNCLSGLKTSNTGGMPDHLCVECLSYVKKFMKFRKKCQQANFTLQQLMNSNKEIKKFHLFSLDRERLGLMPSLSFLDVKQTYYETQVYQWPEDHIWPINLPKQNIPIVHYTTLTKEDTFEDVIANCNSFDNKQTIKIEHDATESKKEIKKSKKKKHEKKALTDIASLLQDKKYSLDSDYVDDNFMEANDLHFDNGLDNDFGNEDLFVNSCKLDLKADGSKFNEEYAEMIPISVTEAKAVIEIKKMFKQGPYKCKGCGLAFKIKKYLKIHSRMHDKHLKGNYHCVICNFYYKTQFLLDCHMTEKHMYKYVCRLCPEVSFDRTSAKTHYCLRHLGGRNWAGQQRPGWLKPRKELKPKGRRNTAIPIPKDAFSCDLIRPEEQYAMIQERKTSRNYLEAKYKCQYCFRGYRLMTTYNNHMVKHDPEISGNLQCDMCKLYFRDQRKMYKHMNMSHLYKFSCKACAAIFTCRSQALAHYKWHKNVTYSCDHCDKKFVKPSTRLTHIRLKHPSTFVCHLCGHSFVSSAGLTCHKQISHPKEHPSTFVCHLCGHSFVSSAGLTCHKQISHPKEHPSTFVCHLCGHSFVSSAGLTCHKQISHPKEHPSTFVCHLCGHSFVSSAGLTCHKQISHPKEDTSENQVHDATNPNYCVDCNILFANEQAFNTHLGSSSKHVKTNISVQITQRDSRKRMRREMGTGPRAARALSLPVERRRNGTSDVLNTGATTANNCEMCGKYLVNDVQARRHYETEHPGSDYLRRYMCEVCGHTARQYANLLVHMRTHTREKPYGCPHCQRRFSMLSNRDRHLVVHTGEKRFQCQHCSRRFTQSSAVKLHIQTVHLKIPYAPWDKKNRKRRKELEAAGVSEGCRRYVVLFPERGLSGPAAGASAGRRGRGEAVQVGVAAVIGAGEHLARRQRHVLLDGRHPQVAGAAATYDESSFRPLARAPREASRLGLFTSASTLGVTTPRSRG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -