Cv-a020289.1
Basic Information
- Insect
- Chloroclystis v-ata
- Gene Symbol
- -
- Assembly
- GCA_963691955.1
- Location
- OY829910.1:4009151-4011738[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.15 10 7.2 0.1 1 21 3 23 3 24 0.91 2 13 0.0052 0.36 11.8 0.0 3 23 96 117 94 117 0.94 3 13 0.072 5 8.2 0.3 2 23 141 163 140 163 0.96 4 13 0.00049 0.034 15.0 0.6 2 23 187 208 186 208 0.96 5 13 0.23 16 6.6 0.5 1 21 212 232 212 233 0.93 6 13 5.9 4.1e+02 2.2 0.1 3 23 276 297 274 297 0.81 7 13 0.57 40 5.4 0.2 2 23 323 345 322 345 0.94 8 13 0.0047 0.33 11.9 0.2 2 23 369 390 368 390 0.94 9 13 0.00015 0.011 16.6 0.0 1 23 394 417 394 417 0.97 10 13 0.015 1 10.4 0.2 1 23 421 444 421 444 0.97 11 13 1.7 1.1e+02 3.9 0.5 1 23 449 474 449 474 0.90 12 13 0.05 3.4 8.7 5.8 1 22 483 504 483 506 0.88 13 13 0.0019 0.13 13.2 0.3 1 23 516 539 516 539 0.97
Sequence Information
- Coding Sequence
- ATGAATTACGTTTGCGATAAATGTGGCACGGCCTATTTGTCTGATCGAGCGCTGCGGAACCATAGACAACAATTAAAATGCGCCAAAACAGCGTACCAACCTCGCAACGGAAAACTTATGCGGTCTCGACgGCGCGGTAAGAGAAATGAGTTAGAGATGGAATCGAAACCAAAAAAGAAACTATTCGAAAGACAAGTAAACCAGAACCCGCAATGGAAAAATGCAGTTCTCGTTCTAAAACATTCGACAGCTATACCGTTTAAGACATGCTTTAATAGAATCATTTGCTCGTACTGCCAAGAGGAATTCGAACCTATGTCGGCATTAAGGGAACACATAAAAGCAGTACACTCGAACGCAGATTTTAATAGCGCCTTCTACAAAGTCATAGATGGACTTAAAGTGGATATATCACAAATGCAGTGCAATATCTGCTCCACTGACATTACAGATATAGACACACTTATGACGCATCTATCTAAAACCCATGATATTCCAGTTAATTTCGACGTCTCGTTCGGAGTGCTACCGTATCGCCAGAATTCCACAGCTCTCTGGATGTGTCTGTATTGTGATAAAACGTACGTAAAGTTCTCGCAAATCAACGAACATTTGCGAAGTCACGTAAAGATTTACACCTGCGATAAATGCTCTGCTACTTTCTTATCTATACACGGTCTGAGGCAGCATGAGCGCAGTTTTAAATGTTACAAGATGAATTATAAACCGCGTTTCGGGAAAACTCTGAAGCATAGGAGGAATACGGAAATCATTCTACAGTGTTCAACCGCTTGTCCTTTCAGAACATGGGGTCAGAACTTCAATTGCATATTCTGCAGGGTTCAATCGAACGATCCTAATGGTTTGAGAGCACACATGGCGGCTAGACACGCAAATTTCGAGATCGGACAAGTATTCAACCGTAAACTACGTAAAGAATTCCTGAAAGTTGACATAACAGATTTACAATGCAAACTTTGCTTCGCGCGTATAGACTCCATCGACGATCTAATGACGCACTTGAAGAACGACCACAAGCAACCAATCAGCACCGACGTCCAGCCAGGAGTCCTACCGTTCAAGTTAAAAGACGGTTCTCACTGGCAATGCGCAATCTGCACTATTCAGTTCACTGATTTCATCTCCCTCAAAAAGCACACAGCGGAACACTATCAGAACTACGTCTGTGATACCTGCGGCGAAGGCTTTATCACCGACACCGCCTTGATAGCACATACAAGAATACCACACGATAACAAGTACGCGTGCGGTAGATGTGTAGCAACCTTTTCGACTTTAGAGGAGCGAAATATAcatatcaaaactcaacacaCAACGTTACCATACATGTGCGTTTACTGTAAGGATAACCCACGATTCGCGACTTGGGAGCTACGAAAACGGCATCTAATGGAGTTTCATAACTACAAACCAGGTGCGGATATGTATGAGTGTACTACTTGTCACATGACGTTTAAGACGAGGTCGCAGAAGTATCATCATAATGTTAAGGCGCATAGGACTAAGAAGGAGGCTGAGTATAGTTATCAGTGTGGTAGTTGTGCTAGGGCGTTTGCGTCTAAAATGTCGTTGGATAAACATATTGCTAAGAAGCATTTCCAtgtttga
- Protein Sequence
- MNYVCDKCGTAYLSDRALRNHRQQLKCAKTAYQPRNGKLMRSRRRGKRNELEMESKPKKKLFERQVNQNPQWKNAVLVLKHSTAIPFKTCFNRIICSYCQEEFEPMSALREHIKAVHSNADFNSAFYKVIDGLKVDISQMQCNICSTDITDIDTLMTHLSKTHDIPVNFDVSFGVLPYRQNSTALWMCLYCDKTYVKFSQINEHLRSHVKIYTCDKCSATFLSIHGLRQHERSFKCYKMNYKPRFGKTLKHRRNTEIILQCSTACPFRTWGQNFNCIFCRVQSNDPNGLRAHMAARHANFEIGQVFNRKLRKEFLKVDITDLQCKLCFARIDSIDDLMTHLKNDHKQPISTDVQPGVLPFKLKDGSHWQCAICTIQFTDFISLKKHTAEHYQNYVCDTCGEGFITDTALIAHTRIPHDNKYACGRCVATFSTLEERNIHIKTQHTTLPYMCVYCKDNPRFATWELRKRHLMEFHNYKPGADMYECTTCHMTFKTRSQKYHHNVKAHRTKKEAEYSYQCGSCARAFASKMSLDKHIAKKHFHV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01360094;
- 90% Identity
- iTF_00811390;
- 80% Identity
- -