Cv-a020293.2
Basic Information
- Insect
- Chloroclystis v-ata
- Gene Symbol
- -
- Assembly
- GCA_963691955.1
- Location
- OY829910.1:4025516-4038373[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.026 1.8 9.6 0.3 3 23 239 260 237 260 0.96 2 17 0.14 9.7 7.3 1.4 2 23 286 308 285 308 0.96 3 17 0.0092 0.63 11.0 0.7 1 23 330 352 330 352 0.97 4 17 0.0026 0.18 12.7 0.6 1 23 356 379 356 379 0.97 5 17 0.51 35 5.5 0.8 2 22 385 405 384 405 0.95 6 17 0.017 1.2 10.2 0.3 1 23 412 435 412 435 0.97 7 17 0.057 3.9 8.5 0.9 1 23 442 464 442 465 0.94 8 17 6.3 4.3e+02 2.1 1.2 2 23 509 531 508 531 0.92 9 17 8.5 5.9e+02 1.7 0.5 2 23 556 578 552 578 0.84 10 17 0.1 6.9 7.8 1.0 2 23 599 620 598 620 0.90 11 17 8.3e-06 0.00057 20.6 0.8 1 23 624 647 624 647 0.97 12 17 0.27 19 6.4 2.6 1 20 653 672 653 674 0.92 13 17 0.0021 0.14 13.1 1.3 1 23 681 704 681 704 0.93 14 17 0.00026 0.018 15.9 3.1 1 23 711 734 711 734 0.96 15 17 0.002 0.14 13.1 3.2 1 23 739 761 739 761 0.96 16 17 5.9e-05 0.0041 17.9 0.7 1 20 767 786 767 789 0.94 17 17 0.00083 0.057 14.3 5.8 1 23 795 818 795 818 0.97
Sequence Information
- Coding Sequence
- ATGGAAGGTAAATCTTCTGATTGGAGGCCCGGCCGTACTGTTTGCCGCTGTTGTCTAACAGAAGGATGTTATAAAGATATATCTACGGAATATTTCTGGATGGGGAAACGAGAGGTTTACGCAGAGATGCTGTCTGACACCCTGAGTCTTTCGATTGCCTTCTCAAACTCCAGCGGTCCAAATAGTAACAGTCGGCTGATATGTGAGCAGTGCATCTCCAGGTTACGAGATGCATCCGAATTCAAACGACAGGTTGCAGATTGTGAGAAAACGTTTATGCATCATCTTGATCCTAGCTCGAGTAAAGTAAAAGAGCCTGAAGCTGAGGTGAAGGTGGAGATGGTCAAGAATGAGAAACAAGACACGAGTGATGATGACTTCGATGACCGTCCGGACTTCCTCGATGTCGACTCTGATGATGAAcTGGACAACCAGCCTCTAACAAAGCTAGCTACCAAGACGCCTAAAAAAGAGCTAGACATCCTAGATCTTCTAGACGTCTCTCAGATCACGGTCAAAAGGAAATCTACCCTCAAAACTAAAGAGCCTCCGAAGAAGGTGCTTAAGAAGAAGGAGATTAAACCGACTGTCAGTAAGGCACCACCGAAGCCGGAGAAAAAAAAAGcGGTTGTCGATCCAACGCGCAGTAACGCTGAGACGGTCCTACGTTGCACTACAGCTTGCCCGTTCAGAGTACATGATAAGAGTCTTCTCTGCCCCTACTGTCACGAGCTGTTTGACGACCCAACGGTATTCAGAACCCATGTACGAGAAGACCACGACAACTGCACTCTAGAAGTGGTCTTCCACAACCTTCCAAAATCGGAATTCGTGAAGGCAGACCTGACAGATCTCACCTGTAAACTGTGCCAGACGAAATTCCACGATCTGGATACTATCGCTGAACACCTATCCACCCAACACTCGAAGAAGATTTACAACGATGCGAAACTAGGAGTCATGCCTTACAAGTTGAAGAAGGACGTATTCAATTGCGCGGTTTGCGATAAACAACTACCCTCACTTCTGCATCTCAACCGTCACACTATATCGCACTTTCTCAGCTTCGTATGCCACGTGTGCGGCAGTAGTTATATAGCGTCTACCGGTCTCCTCAAACACGTGAGATCTAAACACCAAGACTACGAGGTGTATTGCAAGCGATGTCGCACGAAGTTCCCCAGTATGGAAGCGAAGGAACGCCATAGAAGAACGGTTAAAAGCTGTATGCCGTACGCCTGTCCTCAATGCGCTGAGAGATTCCTAGATTGGAAGCAGCGGAAGAAACATATGGAGACTGAACATGGGCAGTCGAAGAGGACTTATCGCTGTCCGGATTGTAACGTTGACTTTGGCAGCGATGCGGCGTATTATAACCATTTTAAACTACACCATTCTGATAACTGTGCTGTGTGCAAGGATTGCGAGTCGAATTACCCGAGCGCGTCTGCAGCAAAGCGCAACGCCGAGGTAATACTGAGGCATGCGACCGTATACCCGTTCAGGCTGCCAGAGGACTCTATGGTCTGTGTGTTCTGCTGCGAGAGCTTCCAGAACGGCACTATGTTCAGGGACCATATGGAGACCGAACATCAATCCGTACCAATCAAAATGGCCTTCCACCATTGCTCAGAAGGCTTCATCAAAGCTGACTGCTCCGATATACGTTGTCGTATCTGTTTCCAACAAGCAGACAGTCTAGAAGAAATCGCTGTACATCTACGCAAAAATCACAATAAACTAATATTGCTAACGGAACCTATCGGTATACAACCGTTCAAGCCAGATAAACTAACCTGTGTCATATGCACAGCCAAATCCTTCAGTCTACGCCAACTAAGTCGacacacacagacacacttCCTACGCTTCACATGCGAATCTTGCGGCAAATCGTACGCCACTAACACATCACTACAAGTACACATCAAATACACGCACACCATCAAAGAGCAATACTGCTGCAGGAAATGCAGGAGGTCATTCAACTCGCTGAACGAAAGGAGGAACCATGTTATGGAGAGTACGAAATGCTGGCCGTATTTGTGTCATCTGTGTGGCGAGCGATACATCACTTGGAAGTCTAAACAATCCCACATGAAGGATGCACATGGGAAAGAAGACGGGCCGTATTCATGCCCGGAATGCGGGAAGATGTTTACGGATAAGAAAGCATGCAATaaacactttaaaataacGCACACGGACGATAACTTCGTCTGTTCGTTTTGCGGCTTGAAGTTCACATCGAAGAATCATTACGAGGAGCATAAAGTTAGTCACACTATGGACAAGCCGTATTCTTGCTCGGTCTGCTACAAAACGTTCGCGAGAAAGAAAAATCTTGCTCAACATCTGTGGATCCATAGCGAGTATAAGCGGTTCGAGTGTAAACTATGCAATAAGAAGTTCAATCAGAAAGTCTGTTTGAGATCGCACAATAAGACCAACCATCCGGAAATGGCTGACTTTGATGAGAATAGTGGCGTTAAATATCTACTAACAGTTCTTAAAAAGTGA
- Protein Sequence
- MEGKSSDWRPGRTVCRCCLTEGCYKDISTEYFWMGKREVYAEMLSDTLSLSIAFSNSSGPNSNSRLICEQCISRLRDASEFKRQVADCEKTFMHHLDPSSSKVKEPEAEVKVEMVKNEKQDTSDDDFDDRPDFLDVDSDDELDNQPLTKLATKTPKKELDILDLLDVSQITVKRKSTLKTKEPPKKVLKKKEIKPTVSKAPPKPEKKKAVVDPTRSNAETVLRCTTACPFRVHDKSLLCPYCHELFDDPTVFRTHVREDHDNCTLEVVFHNLPKSEFVKADLTDLTCKLCQTKFHDLDTIAEHLSTQHSKKIYNDAKLGVMPYKLKKDVFNCAVCDKQLPSLLHLNRHTISHFLSFVCHVCGSSYIASTGLLKHVRSKHQDYEVYCKRCRTKFPSMEAKERHRRTVKSCMPYACPQCAERFLDWKQRKKHMETEHGQSKRTYRCPDCNVDFGSDAAYYNHFKLHHSDNCAVCKDCESNYPSASAAKRNAEVILRHATVYPFRLPEDSMVCVFCCESFQNGTMFRDHMETEHQSVPIKMAFHHCSEGFIKADCSDIRCRICFQQADSLEEIAVHLRKNHNKLILLTEPIGIQPFKPDKLTCVICTAKSFSLRQLSRHTQTHFLRFTCESCGKSYATNTSLQVHIKYTHTIKEQYCCRKCRRSFNSLNERRNHVMESTKCWPYLCHLCGERYITWKSKQSHMKDAHGKEDGPYSCPECGKMFTDKKACNKHFKITHTDDNFVCSFCGLKFTSKNHYEEHKVSHTMDKPYSCSVCYKTFARKKNLAQHLWIHSEYKRFECKLCNKKFNQKVCLRSHNKTNHPEMADFDENSGVKYLLTVLKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -