Cv-a013461.1
Basic Information
- Insect
- Chloroclystis v-ata
- Gene Symbol
- -
- Assembly
- GCA_963691955.1
- Location
- OY829904.1:7791127-7800466[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.58 40 5.4 0.2 3 23 110 130 108 130 0.95 2 20 0.037 2.5 9.1 0.2 2 23 134 156 133 156 0.92 3 20 1.2 81 4.4 6.2 3 23 402 423 400 423 0.94 4 20 0.00045 0.031 15.2 0.7 1 21 431 451 431 452 0.94 5 20 0.035 2.4 9.2 0.5 2 23 462 483 461 483 0.94 6 20 4.4 3e+02 2.6 0.4 1 23 499 522 499 522 0.82 7 20 0.0058 0.4 11.6 0.6 1 23 531 554 531 554 0.98 8 20 0.67 47 5.1 0.2 2 23 571 593 570 593 0.87 9 20 5.8 4e+02 2.2 2.9 8 23 609 625 601 625 0.92 10 20 0.065 4.5 8.3 2.7 1 23 634 657 634 657 0.88 11 20 0.66 45 5.2 0.1 1 23 662 685 662 685 0.93 12 20 0.00026 0.018 15.9 3.1 1 23 691 713 691 713 0.98 13 20 0.00042 0.029 15.2 1.1 1 23 720 742 720 742 0.98 14 20 3.7e-05 0.0026 18.5 1.4 1 23 747 769 747 769 0.96 15 20 0.0039 0.27 12.2 2.0 1 23 775 797 775 797 0.97 16 20 1.5e-06 0.0001 22.9 1.5 1 23 803 825 803 825 0.98 17 20 0.0003 0.02 15.7 3.1 3 23 833 855 832 855 0.92 18 20 0.0017 0.12 13.3 0.6 2 23 865 887 864 887 0.96 19 20 0.22 15 6.7 4.6 1 23 892 914 892 914 0.96 20 20 0.0053 0.37 11.8 3.1 1 23 920 943 920 943 0.98
Sequence Information
- Coding Sequence
- ATGTCTTCAGACGATTCAGAAGACGAGCCACTATCAGTGATAGCTTCTAAAAAGCACTCAGACTATGAAGTGGAAATATTTCCAGTTGTTGAAAGTAAGGCACCAAAAAAGAAGTCATTTACCTCTAAGAAGCCCTGTGACGTATCTATAGAACTACAATACAAGGATGAGCTCCTCCCTTTGACTGTTGAGAGGCCTGCAGATGTTTGGCTCTATCTAAAAGACTTGAATCCAAATGGGCCTTACAGCTGCTTATTGTGTTCAGAATGGTTTTTACATAAAACCAAGATAGTCATTCATTACATAGTAAATCATAAAAAGGATTTCTGTGGTATTTGCAGgtaTTTTGTACCAGATAGAGAATCATGGCAAACTCATTTAAATTTCCATGTACCATGGAACTGTTCACAATGCCCAGAAACATTCCCAACAGAATTACTTCTTCGAGAACACTTCAGTTCACTACACAATCTTGTTCACTGTCGGCTGTGCTACACTCGCCTCAACGATGGAGAAGACTACTACACACATCTTTTCCAAAAACACTCTGTTACCAACCCATCAGCTGTAGCTGAAGAGGCTTTCTGGGAAATGGACCCGGAAAACAACAAGTACCTCTGTCTTCTCTGCTCCAAACCTAACAATGAAATCCAAACATACTCCAACCACTACATGGCATTCCATCACATGACATTAAAATGTCTAGCTCCACTCTTATCTGGAAAGAACTGGAATTTTCCAGTGCGTGGTGCTGAAATAACTATGGATTTTATTGGGAACCAGCTAAAAGCTTTTGAGAAATTTGGTTACATAGACTTGGATAAAAAACCTGACAGGCTTATAGAGAAAACAGAAGAGCCAAATGACCATACCCAGATGGTTGacactttaataaaaaagGAATTCCATGAATTTGAGAACAATGCAACTCCAggaaataatgaaatattagGTGATGTATACAAAGATAATATCCCAAACCAAGACTCAAACAGTGACGGTATTGATGATGTATTTCGAGAacatattacaaaaatgtacaaaggtgatgatgatttcgACAGTACTCTTGTTGAAGTGATCATGCTCCACAAATGTTACTTTGACTATGTTAATGACACTTTAAACAATGTGAATTCTAACACCATGCCTCTAGTGTCAACAATCAACTATGAATCCACTGAGAACATGGTATCAATATTTTGTGATCTTTGCAAAACTCATTTCAAGAAATGCAACACTTTCACACTGCATATGGTCAAGATGCATGGTTTTAACATGGTGCCGACGTTTTGTTGCCGCATTTGTGGGATGACTTTTGAGACTTATTCTGAGTTAGAGACACATGAGAGAGAAGAAATGGCAGATTTTGATGATCTTTGGATCTGTCAGTTTTGTGACAAGGAGTTTGATGATCGGGCAAAGACCAGGCAGCATTTAACTGAGCATTGGGAAGGGATCGAGTATGATAACTGTTTTAGCCCACATCTAGGGTTCAAGTGTAGGTACTGCCCCACTTTGTTTTGGAATGAGACGGATCGGGAGGTTCACCAAGTGAGGGTGCATGCACAGAAGCATTCTGAGGAGTATTATAAATGTGAAGGTTGTGGAGAGCTTCTCAGTGATAaggtcTGGTACATCCACCACTACCTAACTAAACACATGGCCGTAGATAACCCAGAAAGCCTGCTGACATCCACATACCTCCTTAAATGTACTCTCTGTTCTATTGTGTTCCAAAACATTGAAGATGTCCGAGCTCACTTCTTGGACAAACACCcagaaaataagaaaattttcTGTTCACTGGATGCCTGTCAGTACAAGCCATTTAGCCATAAGAAGTCTTTTCATTTGCATTTAAAGTCATTCCACACAACAAAGAAACGGCCAGAGATATTCGCGTGTCAGTATTGCGGCAAGGAGTTCAACACGCACCGCGCCTGCGTCGCGCACACCAACCAGGCGCACGGCGCCGGACGGTTCAACTGCGCCATCTGCCACGAGCCGCTAATTACCGCGGACGAACGTAAGATCCACTACCTCCTACTCCATCCGGGGCAGCACCCGTTCCAGTGCCGCGACTGCGAGAAGTCCTTCCAATACAAGTCGTCGCTCTACCTGCATCGCAAGGAGCACGCGCCCAACAAGCCGGACTACAAGTGCTCCTACTGCGGGAAGATATTCTTGAAACGCGATTCCTTCCGGGAGCACGTAATGATCCACGAGGGTCCGAAGCACGCGTGCTCGTACTGCCCCATGGTGTTCGTGCAGCGCTCCAACATGCTGCGGCACGAGCGGCGGCACACGGGCGAGAGGCCCTACGCGTGCCAGTTCTGCCCCAAGACGTTCAGCGATAAGGGCGCCTGCTCTTCTCACACCAGGATCCATCAGAAGCTGCCGGCATTCCCCTGCATGTACTGCGGCCAAACCTTCGCGCAGAAGTCTAAACTAACTTACCACATCAGAAAACACACGGGAGAGAATCTGGAGACGTGTGGTCACGCGAACTGCGGCAAGATCTTCACCAGCCAGTGCTCGCTGCGGGAACACATGAAGATACACCAGAGGAAGGAGGTTATGCAACCGGTTAAATGTCCTCTTTGCTCTAAATCCTACCAAGACGAGAAATACATGATGCGTCACCTGCGCGCCACCCACACGAGCTCGGCGCACCACTGCCCGCTCTGCAACAAGAAGATGCACAGCCCCTCCGCGCTCAGGGACCACGTGTTCACGCACGGCGGCAAGAAGGCTTACAAGTGCAAACAGTGCTTAAAATCCTACAACGTAAAACGCACAGTGATTCGTCACCTTAAACGACGTCATGGCGTAAAGACCGGAATGGCTGAACACTTCACAAAGCTGGACCCGAGACAATGCAACCTTAACTTAGACGAAGAAACTATGAACAGCATCTTTGGACCTCCAAAACCTGAGACACCAGAAGCTATAAACTTCACAAAGTTGAATAAGCTTAAACAGGTTTTGGACAAAACTCCGAGTGAGTTGTTACCGATAGAGTCAGTGCAAGTCAAGATTGAGTGTGAGTCGGAGGAACCGTCCGAGGAAGAAACAGAATTTCAACCAACTGATTTTGTTAGTGTGAAGATAGAAGGGGTGGAAAGAGAAGATTTTGATGATGAGATGGAAGTGGAATGA
- Protein Sequence
- MSSDDSEDEPLSVIASKKHSDYEVEIFPVVESKAPKKKSFTSKKPCDVSIELQYKDELLPLTVERPADVWLYLKDLNPNGPYSCLLCSEWFLHKTKIVIHYIVNHKKDFCGICRYFVPDRESWQTHLNFHVPWNCSQCPETFPTELLLREHFSSLHNLVHCRLCYTRLNDGEDYYTHLFQKHSVTNPSAVAEEAFWEMDPENNKYLCLLCSKPNNEIQTYSNHYMAFHHMTLKCLAPLLSGKNWNFPVRGAEITMDFIGNQLKAFEKFGYIDLDKKPDRLIEKTEEPNDHTQMVDTLIKKEFHEFENNATPGNNEILGDVYKDNIPNQDSNSDGIDDVFREHITKMYKGDDDFDSTLVEVIMLHKCYFDYVNDTLNNVNSNTMPLVSTINYESTENMVSIFCDLCKTHFKKCNTFTLHMVKMHGFNMVPTFCCRICGMTFETYSELETHEREEMADFDDLWICQFCDKEFDDRAKTRQHLTEHWEGIEYDNCFSPHLGFKCRYCPTLFWNETDREVHQVRVHAQKHSEEYYKCEGCGELLSDKVWYIHHYLTKHMAVDNPESLLTSTYLLKCTLCSIVFQNIEDVRAHFLDKHPENKKIFCSLDACQYKPFSHKKSFHLHLKSFHTTKKRPEIFACQYCGKEFNTHRACVAHTNQAHGAGRFNCAICHEPLITADERKIHYLLLHPGQHPFQCRDCEKSFQYKSSLYLHRKEHAPNKPDYKCSYCGKIFLKRDSFREHVMIHEGPKHACSYCPMVFVQRSNMLRHERRHTGERPYACQFCPKTFSDKGACSSHTRIHQKLPAFPCMYCGQTFAQKSKLTYHIRKHTGENLETCGHANCGKIFTSQCSLREHMKIHQRKEVMQPVKCPLCSKSYQDEKYMMRHLRATHTSSAHHCPLCNKKMHSPSALRDHVFTHGGKKAYKCKQCLKSYNVKRTVIRHLKRRHGVKTGMAEHFTKLDPRQCNLNLDEETMNSIFGPPKPETPEAINFTKLNKLKQVLDKTPSELLPIESVQVKIECESEEPSEEETEFQPTDFVSVKIEGVEREDFDDEMEVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -