Cv-a009362.1
Basic Information
- Insect
- Chloroclystis v-ata
- Gene Symbol
- ZIPIC
- Assembly
- GCA_963691955.1
- Location
- OY829901.1:9308988-9310691[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.68 47 5.1 4.0 2 23 167 188 166 188 0.97 2 13 4.6e-05 0.0032 18.2 1.8 1 23 194 216 194 216 0.98 3 13 0.015 1 10.3 0.5 3 23 236 256 235 256 0.98 4 13 0.00041 0.029 15.3 3.3 1 23 262 285 262 285 0.97 5 13 1.6e-06 0.00011 22.9 1.9 1 23 293 315 293 315 0.98 6 13 0.0009 0.062 14.2 2.1 1 21 321 341 321 343 0.95 7 13 8.8e-06 0.00061 20.5 0.2 1 23 349 371 349 371 0.98 8 13 0.0012 0.085 13.8 3.0 1 23 377 399 377 399 0.92 9 13 1.6e-05 0.0011 19.7 2.2 1 23 405 428 405 428 0.96 10 13 0.17 12 7.0 0.8 3 23 435 452 434 452 0.91 11 13 0.0062 0.42 11.6 2.4 1 21 458 478 458 481 0.91 12 13 0.12 8 7.6 0.1 1 23 487 512 487 512 0.89 13 13 0.011 0.79 10.7 1.8 1 23 518 541 518 541 0.98
Sequence Information
- Coding Sequence
- ATGGAATCCAAAATCTGTCGAATATGTCTCGACCGGACCGCGACGATATCACTGTTCGACAAACTGGACGAGGTGCAATACAGGGAGAAGATTACGAGGTGTGTTGGCGTGAGTATAGAGGAGGGTGATGGGTTGCCGGACGCCATCTGCGGCGGGTGCGCGGGCGACCTGCTCGTGTGCCATGAGTTCGTGGTGCGGTGCCGCGCCTCCGACCGCGCGCTGCGCTGCCTCGACCTGCTCGCTGCCCCCGTACTAGAACCCATCAAGCCAGAAGTCAAGTTAGAAACACCCGCTCACGAAACATTACCCAGATACCTACAATATGATGACTACCAAGACTATCCAGACAACTTATCCAACCATGAAGAACTAGAAATTCCTAGAATAGAGACTGAAAAGGTTGTCAAACCTAAGAAAaagaaaacacaaataaaatatatgaaatcaTTACCAAACCTTATACGTAAGATTAAGCAGAGAGTTTACTCTGGCCCTATTCAGTGTATGACATGTGGGAAGATTCTCAAATGTCACTCTGCCTTTAAGCTGCACCAGCTCACCCATACTAATGAAAAACCGTTCACCTGTGACCTTTGTGCAAAGTGTTTAAGAACCAAAGCTGGTTTGAAGAGACATATCTTAACTCATGAGAGAGCAGACAATGGTAAGAAAAAATGCAAAAGACCTCAATCATCTCCCACCTTGTGTGTTATCTGTGGGCTGAAATTGAAATGCCCATCTGCCCTTGAAATTCACATGAGGAAACACACCGGAGACAAACCATTCACGTGTCTACACTGCAATAAAAAGTATACACTCAGTTTATCACTGAAGAgacacatagcaacatctcaCAACCAAGACCCATCATTGAGCTTTACTTGTGAGCACTGTGGAAAGAATTTCCGTAGCaagaacaatataataattcatttgcgAATACATACAGGGGAGAAACCATACTCCTGTCCATTCTGTGAGGAAAGGTTTGCTCAAATATCATCTCTgatacgtcacaagcgctgcCACACAGGAGAGAGGCCATACTCTTGTGAAACTTGTGGGAAGGCATTTAGAGAGAAGTCTCTAGTCATTAAGCATCAAGCTGTACACAGTGATGTTCGGAATTTCGCCTGCCACATTTGCAGCAAGACATTTAAGACAAAACAAACCCTGCGTTTCCACGTCGACGTCCACAACAACCCCGGAAAGTACATCTGCAATCACTGTGGTACCTCCTTCTCAATCAAGGGCAACCTGCACACACACATAGCAAGAATGCATTCAGAAAAGTCCGGTATATGCACGATATGTGAGAAAACATGTCCTGATTTAGAGGTCCACATGCGGATTCACAACGGCGAGAAACCATACAGCTGCAAGCTTTGTAATCAAGGATTTACCACTCAGCGTGGCATGTCTCACCACATAGGGTTTAAGCACCGCGATTCGACTAAGTTTAAATGCACTACTGGACTTTGTAATAAGGCCTTTCCTACGATCGCGATGTTGGAGTTCCACGTGTTGAAGGCGCACTTGGCCGACACGCCGTACGTGTGCGTGCACTGCGCGCGCGGCTTCCTGCGCCCCTGCGACTTGTCGCGCCACCTGCGCGTCAACCACGCCGATAACACCACCATCAAGTCGCAGTTCATTAAGACTGTCCAGATCTCGGATCCTATTCCTGTAGAAAATGTTGTTTAG
- Protein Sequence
- MESKICRICLDRTATISLFDKLDEVQYREKITRCVGVSIEEGDGLPDAICGGCAGDLLVCHEFVVRCRASDRALRCLDLLAAPVLEPIKPEVKLETPAHETLPRYLQYDDYQDYPDNLSNHEELEIPRIETEKVVKPKKKKTQIKYMKSLPNLIRKIKQRVYSGPIQCMTCGKILKCHSAFKLHQLTHTNEKPFTCDLCAKCLRTKAGLKRHILTHERADNGKKKCKRPQSSPTLCVICGLKLKCPSALEIHMRKHTGDKPFTCLHCNKKYTLSLSLKRHIATSHNQDPSLSFTCEHCGKNFRSKNNIIIHLRIHTGEKPYSCPFCEERFAQISSLIRHKRCHTGERPYSCETCGKAFREKSLVIKHQAVHSDVRNFACHICSKTFKTKQTLRFHVDVHNNPGKYICNHCGTSFSIKGNLHTHIARMHSEKSGICTICEKTCPDLEVHMRIHNGEKPYSCKLCNQGFTTQRGMSHHIGFKHRDSTKFKCTTGLCNKAFPTIAMLEFHVLKAHLADTPYVCVHCARGFLRPCDLSRHLRVNHADNTTIKSQFIKTVQISDPIPVENVV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -