Basic Information

Insect: Chloroclystis v-ata
Gene Symbol: -
Assembly: GCA_963691955.1
Location: OY829898.1:18747690-18753708[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 3 2.1e+02 3.1 0.1 2 23 121 142 120 142 0.92

2 11 1.3e-05 0.00092 20.0 0.3 2 23 236 257 236 257 0.95

3 11 0.00033 0.023 15.6 0.1 6 23 267 285 266 285 0.96

4 11 0.0023 0.16 12.9 0.2 1 23 291 313 291 313 0.98

5 11 0.00027 0.019 15.8 0.4 1 23 319 341 319 341 0.99

6 11 7.7e-05 0.0053 17.6 0.4 1 20 346 365 346 367 0.94

7 11 0.03 2 9.4 0.8 2 23 449 470 448 470 0.96

8 11 0.0041 0.28 12.1 0.1 1 23 476 498 476 498 0.93

9 11 0.00084 0.058 14.3 0.1 3 23 506 526 505 526 0.98

10 11 1.4e-05 0.00096 19.9 1.7 1 23 532 554 532 554 0.98

11 11 0.0099 0.69 10.9 0.1 1 23 560 582 560 582 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	3	2.1e+02	3.1	0.1	2	23	121	142	120	142	0.92
2	11	1.3e-05	0.00092	20.0	0.3	2	23	236	257	236	257	0.95
3	11	0.00033	0.023	15.6	0.1	6	23	267	285	266	285	0.96
4	11	0.0023	0.16	12.9	0.2	1	23	291	313	291	313	0.98
5	11	0.00027	0.019	15.8	0.4	1	23	319	341	319	341	0.99
6	11	7.7e-05	0.0053	17.6	0.4	1	20	346	365	346	367	0.94
7	11	0.03	2	9.4	0.8	2	23	449	470	448	470	0.96
8	11	0.0041	0.28	12.1	0.1	1	23	476	498	476	498	0.93
9	11	0.00084	0.058	14.3	0.1	3	23	506	526	505	526	0.98
10	11	1.4e-05	0.00096	19.9	1.7	1	23	532	554	532	554	0.98
11	11	0.0099	0.69	10.9	0.1	1	23	560	582	560	582	0.96

Sequence Information

Coding Sequence: ATGGAGCGCCAACATTTTGACACGGAAATACGCGTTGGTACGCTCCTTGTGGACGCAACGTTCGCGCGTAACACGCGCGAGAGAAACGCAGCGTATTCGCCCTTCCTGGACAAGCAcTTGCAACAAGAGGATGATCTCCCAAATGTGGCGTGCCGGGTGTGTGCGGATCAGCTGCTAATGTGGCTGCAGATGCGATCCCGCAGCGTCGCCAACCAACAGCTGCTGGCTGCTCATGCAGAGAAGACCAACCAACGACTGCgtttgAATAATATAACTGTCAACAGACAAGAGAGATCGCGCTTGAGCGAAACGGTCGCCAGCACTCTCGACTCCTACTCCGTTAGCGTAGGGACCGAGATCGTCTGTCAGGAGTGCGCCTCGAGGTTCACTATCGACGAGTTCGTACGGCATTTGGAGTCGAGCCACGAATCCGTGCAGGACAGGGAGGCGGTCGAGACGTTCGTGAGAGATTATGTGACTTTCGAGGAGACGCTCGAGCTAGATCTAGACGACGCCGCGTCACCCTCTGCAGCTTCCGAGGAGCTCTCGTCGAAGGGCGATGTTCGCACGGACCCGCCGGAATCCACCGCCGACCCGGCGCTACGGCGAGGTCGGCGCTCGGACGAGAACGAGGGAGGTCGAAGGCCCGTCGGGGGCGGGGCGGACGCGGCCGACGGCGAACGCAACCAGAAGCGTATCCCGGCCGTGTGCCCCACCTGCAACCGCACCTTCTCCAACAAGTACAACATGCTCGCGCACCTGCTCGCGCACGGAGCCGCGCGCCGCTACCCCTGCGCGTGCGGCCGCTCCTACTCCACGCGCGGCAACCTGCGCGCGCACCGCCGCGCCGACCACGCGCGCCTGCGTCCGCACCGCTGCCCCGCCTGCCCCCGGGCCTTCGTCACGCGCGCCCAGCGCGACGCGCACGCGCGGACGCACACCGGCGAGACGCCCTACCGCTGCGACGCCTGCGGCCGCGCCTTCCGCGCCAAGCGGCTGCTGGACCAGCACGAGCGCACGCACGCCCCCCCGCACTTCCCCTGCCGCCTCTGCGGCCGCGCCTTCCGCCGCCGCGCGCACCTGCGCTACCACGTCGGCACCCGGACGGACCCCGCGACCCCCTCGCGCCGCTGCGCCGCGCCCTCCGCGCGCTCCGCGACCACCTGCTGCGCCGCCACCTCGCGCCGCGCCCCCCCGCGCccgccccctcgccccccgcgccccgcgacCCCCGCCGACTACGACGACCTCAGCGCGCGCAACCTGCGGCGCTCGCGTCTCTCGCCGGACACGCGGCGCACGCTGGCCGAGGCGCGCGCGCGGGCCGGCGCGGAGGGCGGCCTGCGCTGCGCCCTCTGCGCGCGCCGCCTCGCCTCCGCGCACGCGCTGCTGCACCACCTGCGCGTGCACAGCGGCGCGCGCCCGCACGTGTGCCACCGCTGCGGCGCCGCCTTCACCGCGCCCGGCGGCCTGGCGCGCCACGCCGCCGCGCACgagccgcgcccgcgccgcgcctgcTCCCTGTGCCCCGCCACGCTCGCCAACGAGCAGAACCTGCGCCAGCACCTGCGCACGCACACGGGCGAGCGGCCGCACCAGTGCGCGCGCTGCGGCCGCCGGTTCGCGCAGGCCGGCGCGCTGCACGCCCACCGCCGCACGCACgacgcgcgccgcccgcacgCCTGCGCGCGCTGCCCCGCCGCCTTCCGCCTGCGCGCCGGCCTCGCGCGCCACGCGCGCCGCCACGAAGGGAGCCTCACGAGCGTCTCGTTTGCCGCAGGGGCGCCGTGA
Protein Sequence: MERQHFDTEIRVGTLLVDATFARNTRERNAAYSPFLDKHLQQEDDLPNVACRVCADQLLMWLQMRSRSVANQQLLAAHAEKTNQRLRLNNITVNRQERSRLSETVASTLDSYSVSVGTEIVCQECASRFTIDEFVRHLESSHESVQDREAVETFVRDYVTFEETLELDLDDAASPSAASEELSSKGDVRTDPPESTADPALRRGRRSDENEGGRRPVGGGADAADGERNQKRIPAVCPTCNRTFSNKYNMLAHLLAHGAARRYPCACGRSYSTRGNLRAHRRADHARLRPHRCPACPRAFVTRAQRDAHARTHTGETPYRCDACGRAFRAKRLLDQHERTHAPPHFPCRLCGRAFRRRAHLRYHVGTRTDPATPSRRCAAPSARSATTCCAATSRRAPPRPPPRPPRPATPADYDDLSARNLRRSRLSPDTRRTLAEARARAGAEGGLRCALCARRLASAHALLHHLRVHSGARPHVCHRCGAAFTAPGGLARHAAAHEPRPRRACSLCPATLANEQNLRQHLRTHTGERPHQCARCGRRFAQAGALHAHRRTHDARRPHACARCPAAFRLRAGLARHARRHEGSLTSVSFAAGAP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -