Basic Information

Insect: Chloroclystis v-ata
Gene Symbol: prg
Assembly: GCA_963691955.1
Location: OY829905.1:9711770-9713675[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.57 39 5.4 0.4 2 15 206 219 205 228 0.78

2 10 0.048 3.3 8.8 0.2 1 23 234 257 234 257 0.94

3 10 1.2e-05 0.00085 20.1 3.5 1 23 263 285 263 285 0.96

4 10 2.9e-07 2e-05 25.2 2.8 1 23 291 313 291 313 0.99

5 10 5.5e-05 0.0038 18.0 0.0 1 23 319 341 319 341 0.97

6 10 0.00066 0.046 14.6 1.3 1 23 347 369 347 369 0.96

7 10 7.2e-05 0.005 17.6 1.0 2 23 459 481 458 481 0.95

8 10 1.8e-05 0.0012 19.6 2.1 1 23 487 509 487 509 0.98

9 10 1.7e-05 0.0012 19.6 3.1 1 23 515 537 515 537 0.97

10 10 0.0016 0.11 13.4 0.0 3 23 546 566 544 566 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.57	39	5.4	0.4	2	15	206	219	205	228	0.78
2	10	0.048	3.3	8.8	0.2	1	23	234	257	234	257	0.94
3	10	1.2e-05	0.00085	20.1	3.5	1	23	263	285	263	285	0.96
4	10	2.9e-07	2e-05	25.2	2.8	1	23	291	313	291	313	0.99
5	10	5.5e-05	0.0038	18.0	0.0	1	23	319	341	319	341	0.97
6	10	0.00066	0.046	14.6	1.3	1	23	347	369	347	369	0.96
7	10	7.2e-05	0.005	17.6	1.0	2	23	459	481	458	481	0.95
8	10	1.8e-05	0.0012	19.6	2.1	1	23	487	509	487	509	0.98
9	10	1.7e-05	0.0012	19.6	3.1	1	23	515	537	515	537	0.97
10	10	0.0016	0.11	13.4	0.0	3	23	546	566	544	566	0.92

Sequence Information

Coding Sequence: ATGGAAGACTCCTTTATCATCGCTAACTTCCACGCGCTATGTCGCTTGTGTCTGAATAAAAGCGCGCTCACAGTGTCGATTTACGGGGCTGCGCCCGACGATGAGACTAAAGTATTACTAACCTCCAAAATCGCTAAATGTTGCGAAATACAGGTGGATGTTAATGATGGCCTCCCAGGAAAAATATGCTACAGATGTCTTcttaaattagataaatgtTCCAAGTTTAGAACACAATGCATTCAGAATGAGAATAGACTGAGGCAGATCACAAATCATGTAAATGACCGTGACCACTCAAACTCTTCAGAACTTAGcaattataactataataatacccATGATATCAAACCTAAGGTTGAAGACTACATTGTAGAAGATAGTGTGGTCATGGTGGTTGATCCCAGTCTTGACTATGACTCATCAGAAGATTCTGATCAAGATGCAACAGAGAGAACTTTCCAAAACAATCAAAGGAAGGTAAGACAGCCTCAACAATTCCATCATCATGAAGATTTTGACAGGGAAATAACTCCAGAACATGATGTCAATGATAGAGAAACCTCCCCAGATAGAGAAACAACTACAGAATCATCATTCTTCAGAAATGTATCCATGTGTCAATACTGTGACCAAGCCTTTGTATCTGCTGAAAAATGTGCTGAACATGAACTTGCATACCATGATCCCAAGTTACCTTACAAATGTGTGGAATGCAGCCTAGTATTTGCTGAACGTGCTCAATATGTTCTACACTCTAAACAAGTTCATGGCAATGATAAACCATATCACTGTCCAGaatgtgaaaaatgttttggcCGGCGTTCGGATCTAAGAAAACACTCAATAGTACACACTGGAATTAGACCCTATCAATGTCAATATTGCTTGAAAAGTTTTTCTCGTAATACAAACCTCAGTAAGCATCTCCGAATTCATGCAGGGCACAAACCTCATGTATGTCCATTATGTCCCAGAAGCTTTGTAGCTAAAGGAGATTTAGCACGCCATGTACTTGTTCACTCTGGACAGAAGCCTTACAGATGTAGAAAATGTCCTTTGACATTTGGGAGACGAGACAAGCTCCTCAAACATGAAGTTAGACATGGGCCCCCAAGTCCTGAACACCTTGATAATGATAATCAAGACATGCAAGACATGGTTGTAAATGTTAATCCATTCAGTAATCTAATGACTTCCCCAAATAGGAATCAAACAGATGGGTCTAATACTGACTATGACCTCCCTAGAGTCCCTGATCATATTTCTGGTGAAAGTAGCTTTAGTAGAGTTCAGAAAAATCCCTCTACATCCAAGCTATCACCTTCCCcaccaaaaaaacaaaatctagCTAAAAATAGACCTAAGAATATAAAGTGCCACCAATGTCCTAAAAGATTCTCATCTCTAGATGCCTACAAAACTCATGTATCAGTAGCTCACATTGGGTCTCGCAACTTCCAATGCAAAATATGCTTTAAGAAATTTGCACGTAAGAGAGAACTAGACCGTCACACTCTTATTCACTCTGGCATGAAACCATTTTCGTGCAGTCAatgtgataagaaatttacTAGAAAAGATAAACTTGACAAACATGAACAAAGCCACGAATGTTTGGTTGTGAATATGCCTTGTATTGAATGTGGTGCGACATTTGAGAAGAAAGCTGATTTAGTTGCTCATATCAAGTCGCATTTCACTGATAATTTTGATGACAAATTAACACAAATGAAAAAAGAAGATGAACCTGACTTTCCTCTAGATGATAACTTTTATGATTTAGAGACATGA
Protein Sequence: MEDSFIIANFHALCRLCLNKSALTVSIYGAAPDDETKVLLTSKIAKCCEIQVDVNDGLPGKICYRCLLKLDKCSKFRTQCIQNENRLRQITNHVNDRDHSNSSELSNYNYNNTHDIKPKVEDYIVEDSVVMVVDPSLDYDSSEDSDQDATERTFQNNQRKVRQPQQFHHHEDFDREITPEHDVNDRETSPDRETTTESSFFRNVSMCQYCDQAFVSAEKCAEHELAYHDPKLPYKCVECSLVFAERAQYVLHSKQVHGNDKPYHCPECEKCFGRRSDLRKHSIVHTGIRPYQCQYCLKSFSRNTNLSKHLRIHAGHKPHVCPLCPRSFVAKGDLARHVLVHSGQKPYRCRKCPLTFGRRDKLLKHEVRHGPPSPEHLDNDNQDMQDMVVNVNPFSNLMTSPNRNQTDGSNTDYDLPRVPDHISGESSFSRVQKNPSTSKLSPSPPKKQNLAKNRPKNIKCHQCPKRFSSLDAYKTHVSVAHIGSRNFQCKICFKKFARKRELDRHTLIHSGMKPFSCSQCDKKFTRKDKLDKHEQSHECLVVNMPCIECGATFEKKADLVAHIKSHFTDNFDDKLTQMKKEDEPDFPLDDNFYDLET

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00318316;
90% Identity: iTF_00699477;
80% Identity: -