Basic Information

Insect: Chloroclystis v-ata
Gene Symbol: PRDM5
Assembly: GCA_963691955.1
Location: OY829896.1:16108223-16122349[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.94 65 4.7 0.7 3 23 48 69 46 69 0.92

2 15 0.0076 0.52 11.3 0.8 1 23 75 97 75 97 0.97

3 15 0.015 1.1 10.3 3.4 1 23 103 126 103 126 0.97

4 15 0.028 2 9.5 0.4 1 23 135 158 135 158 0.93

5 15 1.9e-05 0.0013 19.5 2.5 3 23 171 192 170 192 0.96

6 15 1.2e-05 0.00081 20.1 3.0 1 23 198 220 198 220 0.99

7 15 0.00033 0.023 15.6 3.0 3 21 228 246 226 247 0.93

8 15 8e-06 0.00055 20.7 1.6 1 23 280 303 280 303 0.92

9 15 0.0057 0.39 11.7 1.4 2 23 310 332 309 332 0.96

10 15 0.00064 0.044 14.7 0.1 1 23 345 367 345 367 0.96

11 15 0.00059 0.041 14.8 1.1 1 22 373 394 373 398 0.93

12 15 0.029 2 9.5 1.4 2 23 407 429 406 429 0.95

13 15 0.3 21 6.3 1.2 1 23 435 458 435 458 0.91

14 15 5.4e-06 0.00037 21.2 0.5 1 23 467 489 467 489 0.99

15 15 0.001 0.071 14.0 3.8 1 23 495 518 495 518 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.94	65	4.7	0.7	3	23	48	69	46	69	0.92
2	15	0.0076	0.52	11.3	0.8	1	23	75	97	75	97	0.97
3	15	0.015	1.1	10.3	3.4	1	23	103	126	103	126	0.97
4	15	0.028	2	9.5	0.4	1	23	135	158	135	158	0.93
5	15	1.9e-05	0.0013	19.5	2.5	3	23	171	192	170	192	0.96
6	15	1.2e-05	0.00081	20.1	3.0	1	23	198	220	198	220	0.99
7	15	0.00033	0.023	15.6	3.0	3	21	228	246	226	247	0.93
8	15	8e-06	0.00055	20.7	1.6	1	23	280	303	280	303	0.92
9	15	0.0057	0.39	11.7	1.4	2	23	310	332	309	332	0.96
10	15	0.00064	0.044	14.7	0.1	1	23	345	367	345	367	0.96
11	15	0.00059	0.041	14.8	1.1	1	22	373	394	373	398	0.93
12	15	0.029	2	9.5	1.4	2	23	407	429	406	429	0.95
13	15	0.3	21	6.3	1.2	1	23	435	458	435	458	0.91
14	15	5.4e-06	0.00037	21.2	0.5	1	23	467	489	467	489	0.99
15	15	0.001	0.071	14.0	3.8	1	23	495	518	495	518	0.95

Sequence Information

Coding Sequence: ATGGAAAAAATATGCAGGCTTTGCTTAAAGCTTGTTCAGGACAGTATTGCGATAAAACTCGTTGCGGTTTCCGAAATTATGTCTTATTTACGATTAGAGATCCTTCGGCATGGTAAAGTGCACGCCGGTTTCAAACTGTTCTGTCGGTTCCGGTGCGGGTACTCCAGCGCCTACTCGGGCTCCGTCAAGGACCACGAGAAACGGCACTCCGATCAACGCAATTATACCTGTAAGACCTGTGGCAAGGGTTTTCTGGTGAAGACCTGGTACGACCAGCATCAGAACATACACAAGAAAATCAAGCCGTATGTGTGTGATTTCTGCGGAATGGCCTTTCATATGCAcagGTACCTAGTAGCGCACCGCAACAAGAAACACCCGGGTTTGTCTGCCATTCAGAAGTACATCTGTACAAAGTGCAGTTTCACAAGTGATAACAAGAATGGCCTTACGACACATGTCATTGAGGAGCACAGTGAGAACCCTTCAGAATCCAAATTGACCCTGCTCTGTGACCACTGCGGTAAGGGCTTCATCAGAACCGACCATCTCATGAACCACATGAACGGAACACACTATGGCATCAAACCTTATTCCTGCAGTATTTGCAACAAGCAGTTCCAAAAGAAGTTCAACCTCAAAGTCCACGAGCGCACTCACACGGGCGAAGGCAGGCACCTCTGCTTGTATTGCGGAAAGTTCTATGCACAGAAGAGCACTCTGCATCGACATCAGAAAAATAGATATAAATGCACAAGATGTGAAGTGAATCGAGTGAGCCACAATGCAATAAGGAGACATTTTGCAGCGAAACACAGTGTCTTAGGATCTTCTTTGTTCCAGTGTTCACAGTGTCCTAAGGCTTTCAaaAACAAAGTGTCTCTACGAAAGCACGAGACAAACTCTCACTCGAACAGCGAGAGAGTCACCTGTGACTCCTGCCTCCACTCCTTCATCAGCAAGGACACGCTGCTTAATCATATCTtaagGAAACACCCGCCAGATGGCGCCTCAGACAGTTACCGTAAACGTCACGTTTGCACAGAGTGCGGGCTCGCGTTCGCGGCGCCCTATCTGCTGCGGAGCCACGCCGCCAGACACACGGACACGCGCCCCTTCTACTGTGTAGAATGTGACAGAAGTTTCAAGACTGAAAAAATACTGACGAGGCATCTGAAAACAGCTTCGCGACATGTCTTCGACGCGGATTTGCATGTTTCGTGCGATCGCTGCCCACAGAGGTTCAGCTGCAAGCGTGCTCTGGCGCGGCACGTGAACCGCGTGCACCTGCACGTGCGCCCGCACGCCTGCGACAGATGTGACCGGGCATATCTGAACAGCTGGTCGCTGCGAGAACACAAGATGTTCAGCCACGAGGGCTTCAAGAAGGAGCGCCGCTACCCTTGCACACTCTGTGATAAGATATTTGATAGAAGTTCAATTCTGAAATCCCACATCCGCACCCACACGGGCGAGCGGCCCTACCACTGCCAACACTGTCCCTCGCAGTTTGTGCAGAGTTCGCAGCTCAGAACGCACACAAATCTGGTTCATCTGAAATTGACGCGCGATGGAAAACCGAAACAACCTGTTAAATAA
Protein Sequence: MEKICRLCLKLVQDSIAIKLVAVSEIMSYLRLEILRHGKVHAGFKLFCRFRCGYSSAYSGSVKDHEKRHSDQRNYTCKTCGKGFLVKTWYDQHQNIHKKIKPYVCDFCGMAFHMHRYLVAHRNKKHPGLSAIQKYICTKCSFTSDNKNGLTTHVIEEHSENPSESKLTLLCDHCGKGFIRTDHLMNHMNGTHYGIKPYSCSICNKQFQKKFNLKVHERTHTGEGRHLCLYCGKFYAQKSTLHRHQKNRYKCTRCEVNRVSHNAIRRHFAAKHSVLGSSLFQCSQCPKAFKNKVSLRKHETNSHSNSERVTCDSCLHSFISKDTLLNHILRKHPPDGASDSYRKRHVCTECGLAFAAPYLLRSHAARHTDTRPFYCVECDRSFKTEKILTRHLKTASRHVFDADLHVSCDRCPQRFSCKRALARHVNRVHLHVRPHACDRCDRAYLNSWSLREHKMFSHEGFKKERRYPCTLCDKIFDRSSILKSHIRTHTGERPYHCQHCPSQFVQSSQLRTHTNLVHLKLTRDGKPKQPVK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -