Cv-a001880.1
Basic Information
- Insect
- Chloroclystis v-ata
- Gene Symbol
- ZEB2
- Assembly
- GCA_963691955.1
- Location
- OY829896.1:3436105-3438731[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 4e-05 0.0027 18.5 0.1 2 23 125 146 124 146 0.96 2 11 9.8e-05 0.0068 17.2 0.5 1 23 153 175 153 175 0.98 3 11 0.00048 0.033 15.1 1.2 1 21 181 201 181 202 0.96 4 11 1.4e-05 0.00096 19.9 4.3 2 23 208 229 207 229 0.97 5 11 1.6e-05 0.0011 19.7 3.3 1 23 236 258 236 258 0.98 6 11 1.4e-05 0.00095 19.9 4.8 1 23 264 286 264 286 0.98 7 11 6.9e-06 0.00048 20.8 1.0 3 23 293 313 293 313 0.99 8 11 0.00015 0.01 16.6 2.4 1 23 319 341 319 341 0.97 9 11 3e-05 0.0021 18.8 0.1 3 23 348 368 347 368 0.97 10 11 0.001 0.071 14.0 0.4 1 21 372 392 372 393 0.93 11 11 8.3e-06 0.00057 20.6 1.4 2 23 417 438 416 438 0.97
Sequence Information
- Coding Sequence
- ATGAATACTTCAGCTTTTTGTGGAGTCTGCCTCGCTGGTGGTAACATAAACCTCTATTCGACCAATGATTACCTCATGGAAATATACGAAAAACTGATCAACACACAGgTTCACTCCGACGACCCGAGACATATAAAAGCAGTTTGCTGTTTCTGTTACCAGAAGTTGGTGAAATACCACAACTTTTCCGAAATGGCGCAGAGAAATGAGAAAATTCTTAGTAATCTACTTCAAAATGGAGTGTTTGAGGTAAATCCTGCTATTGGGGAACTCAATGACACGCATCATTTGTCCTTTGAACCGGTGCAGAGTGTTACAATTAATGATCGGGTGCGGCTGCACATGAACCGAGTGCATGGCGTACAAATGTTGGTGTGCAGGATATGTGGTTGGCAGTACACTGATAAAAGTAAACTAGAGGAACATTTAATTTCACATTCTAATCAACAGCCATGTTACATCTGCGCTGAGTGTAATGATAAATTTAGCAATAAAACACTATTGATAAGTCACATGATGAAACACACTGGAGAAAAGCCTTTTAGGTGCTCTAAATGCTCTAACAGATTTCGTACTTCAAATGCTTTGAGATtacatataaaatctaaaaaagaTCCCTTAACTTGCACTATATGTGAAGAAACATTTTGtcaaaaaaagtttttaaataatcatatGAAAACGCATGGAGAAGAGGACTATAACTATAAGTGTGGAGAATGTGACAAGAAATTCAGGCAAAAACACCAATATGTGATGCACTTGAGTATTCACACTGGGGAAAAGCCCTTCACTTGTCCTATATGTAAAAAGTGCTTCAGAGTAAAAAGATTCATGAACAAACATATGATAACTCACTCAGCTCTGCCCATAGGTTGTACTATATGTGAGAAAAGATTTAGATTCAAGCCTGAGTTAAAGGAACATATGAGAATTCATGTCAAAGAAAGGCCTTTCTTCTGCGAAATTTGTAACAATAACTTCAAAGAGAAGAGGACTTTGGTAAAACACATGAAGAGTCATTTGCCTGCACCAGAAGCGTGTGCTGTCTGTGGTGAacagtttacaataaaaagCGACCTGGAAACACATATGAAAATTCACTCCAAGGATTATACATGTTTAGAATGTAATATGGGTTTCAGTTCAAAGAGATTGCTCAATGAACATAGTAAATCTTGTGAAGAACCGCCGGTAAGTGATACTGCGAATGTGCCGCAGATAGCTCATAACACTGAAGACATCTTAACTTGTCCTGATTGCAAGAAACAATTTGACAAGAAATTCCTTCTAGTAAGGCATATGAAACTTCACAACAAAACGTGA
- Protein Sequence
- MNTSAFCGVCLAGGNINLYSTNDYLMEIYEKLINTQVHSDDPRHIKAVCCFCYQKLVKYHNFSEMAQRNEKILSNLLQNGVFEVNPAIGELNDTHHLSFEPVQSVTINDRVRLHMNRVHGVQMLVCRICGWQYTDKSKLEEHLISHSNQQPCYICAECNDKFSNKTLLISHMMKHTGEKPFRCSKCSNRFRTSNALRLHIKSKKDPLTCTICEETFCQKKFLNNHMKTHGEEDYNYKCGECDKKFRQKHQYVMHLSIHTGEKPFTCPICKKCFRVKRFMNKHMITHSALPIGCTICEKRFRFKPELKEHMRIHVKERPFFCEICNNNFKEKRTLVKHMKSHLPAPEACAVCGEQFTIKSDLETHMKIHSKDYTCLECNMGFSSKRLLNEHSKSCEEPPVSDTANVPQIAHNTEDILTCPDCKKQFDKKFLLVRHMKLHNKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -