Basic Information

Insect: Chloroclystis v-ata
Gene Symbol: -
Assembly: GCA_963691955.1
Location: OY829907.1:3535908-3539550[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 1.8e-06 0.00012 22.7 3.6 2 23 90 111 89 111 0.97

2 8 5.1e-08 3.5e-06 27.6 0.6 1 23 117 139 117 139 0.98

3 8 2.5e-06 0.00017 22.2 0.9 1 23 145 167 145 167 0.98

4 8 2.5e-05 0.0017 19.1 0.3 1 23 173 195 173 195 0.98

5 8 0.00092 0.063 14.2 0.3 3 23 203 223 201 223 0.98

6 8 7.4e-07 5.1e-05 23.9 2.6 1 23 229 251 229 251 0.99

7 8 1.8e-08 1.3e-06 29.0 0.5 1 23 257 279 257 279 0.99

8 8 2.7e-06 0.00018 22.1 0.3 1 23 285 307 285 307 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	1.8e-06	0.00012	22.7	3.6	2	23	90	111	89	111	0.97
2	8	5.1e-08	3.5e-06	27.6	0.6	1	23	117	139	117	139	0.98
3	8	2.5e-06	0.00017	22.2	0.9	1	23	145	167	145	167	0.98
4	8	2.5e-05	0.0017	19.1	0.3	1	23	173	195	173	195	0.98
5	8	0.00092	0.063	14.2	0.3	3	23	203	223	201	223	0.98
6	8	7.4e-07	5.1e-05	23.9	2.6	1	23	229	251	229	251	0.99
7	8	1.8e-08	1.3e-06	29.0	0.5	1	23	257	279	257	279	0.99
8	8	2.7e-06	0.00018	22.1	0.3	1	23	285	307	285	307	0.98

Sequence Information

Coding Sequence: ATGATCCGTCGGTGTCGAATTTGTCTCCACGATAAATTATTGCTACGTTTTGTAAACGACGATCTCAAAAGTATTTACGAAAGACTTACTAACACTCCGTTTGCCTCCAATGATGCGAGGTCGAAAGAGGTGTGCAGTTACTGCCATCAGAAACTGCTGAAATGTTTGACCTTCTCGGAGATGGCTCGGAAATCTGAAGAGATGCTAAACCAGCTGTTCATTGACAGAAATGAGCACATGAAAATACACACTAATAAAAAGGCCCTTTCATGTACTAAATGTGATAAAAAATTCACTAACCGAAAGACCTTGAAATATCACATGAAAATCCACACCAACGATATGCCCTTCATGTGCTCTGAATGTGGTAAACAATTTAGTGATAAACAATATTTGGTGGCCCACATTAGAACACATACCAACGAAAATCCCTTCAGTTGTTCTGAATGTGGAAAAGCCCTCAGaactaaacaatatttatcttcTCACATGAAAATACACTTTGAAAGAGATACATATGACTGTCCTGTATGTGACAAAGAATTTTTGGACAAAAAAGGGTTAAAGCTACACATGAATTCGCATACTGGAGAAAAGCCTTTTGGATGTCCTTTATGTGAGAAAAAGTTTGGTAGAAAAAATGTGCTTGATTCTCATATCAAGGTGCACACCGGAGAGAAACCATATAGTTGTACTGAATGCAGTAAACAGTTTAGGGAAAAGTCATTTTTGACTGTACATATGAGGACTCACACGGGGGAGAGACCGTACCCGTGCTCTGAATGTGACAAGAGCTTCAAGGAGAGATCGGCGTTGGTGAAGCACATCAGAACTCACACCGGAGAGAAGCCCTATGCTTGTTCTGTTTGTGATAAGCGGTTTGCTCAACAATCTGCTGCAACACTTCATATGAAAAGACACAAAGTTTGA
Protein Sequence: MIRRCRICLHDKLLLRFVNDDLKSIYERLTNTPFASNDARSKEVCSYCHQKLLKCLTFSEMARKSEEMLNQLFIDRNEHMKIHTNKKALSCTKCDKKFTNRKTLKYHMKIHTNDMPFMCSECGKQFSDKQYLVAHIRTHTNENPFSCSECGKALRTKQYLSSHMKIHFERDTYDCPVCDKEFLDKKGLKLHMNSHTGEKPFGCPLCEKKFGRKNVLDSHIKVHTGEKPYSCTECSKQFREKSFLTVHMRTHTGERPYPCSECDKSFKERSALVKHIRTHTGEKPYACSVCDKRFAQQSAATLHMKRHKV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00321789;
90% Identity: iTF_00321789;
80% Identity: -