Cv-a020288.1
Basic Information
- Insect
- Chloroclystis v-ata
- Gene Symbol
- -
- Assembly
- GCA_963691955.1
- Location
- OY829910.1:4004656-4007189[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0082 0.57 11.2 1.8 1 21 73 93 73 94 0.96 2 18 0.092 6.4 7.9 0.2 2 23 122 143 122 143 0.95 3 18 0.0017 0.12 13.3 0.3 2 23 166 187 165 187 0.97 4 18 0.047 3.3 8.8 0.1 1 23 191 213 191 213 0.94 5 18 0.0017 0.12 13.3 0.1 1 23 218 241 218 241 0.90 6 18 0.013 0.9 10.5 3.0 1 23 247 270 247 270 0.95 7 18 0.00075 0.051 14.5 1.5 1 23 277 300 277 300 0.97 8 18 2.3e-05 0.0016 19.2 3.4 1 23 307 329 307 329 0.97 9 18 5.2e-06 0.00036 21.2 2.3 1 23 335 357 335 357 0.98 10 18 0.038 2.7 9.1 0.2 2 16 361 375 360 377 0.88 11 18 0.00034 0.024 15.5 0.5 1 23 443 465 443 465 0.97 12 18 0.56 38 5.4 0.3 2 23 492 513 491 513 0.94 13 18 0.013 0.92 10.5 0.7 1 23 536 558 536 558 0.98 14 18 0.00059 0.041 14.8 0.4 1 21 562 582 562 583 0.93 15 18 0.0057 0.39 11.7 0.2 1 23 594 617 594 617 0.93 16 18 0.036 2.5 9.1 1.3 1 23 623 646 623 646 0.90 17 18 0.00072 0.05 14.5 1.0 1 23 653 676 653 676 0.97 18 18 0.0071 0.49 11.4 2.7 1 23 685 707 685 707 0.98
Sequence Information
- Coding Sequence
- ATGAATAGGAATCTgatagtgtttttatttttaggatgTGGACAAATCATCGGCCGTACCAAATTTGTAAAAGTCGGTGATAAGTATTTAGAAGTGAAACCCAAACCAAAATACCAGCGGAGCACGAGAGCAGAGGCTCGCATCGCCACCAAGAAGAATGCCACTTCTATACTCCAGTGTTGGACATTCACACCCTTCCGCTGGAAGAAGAACAAATTCAGATGTGCCTACTGCGAAGAAGACTTCACAGAATGCCACTCTCTAAGAGATCACATCAAACTTTGCGCTACCGAACACGACATCAAAGATATCTACAACAAATTCAAAGAAATGTCGCTTATAAATGTCGATACAACCGATGCTGAATGCACTATATGCTCCGAACTATTCACAGACATCAAGCAAATGCGCGAACATGTCATCCAACATGGCTTCGAGTTCGACACCAAACACCCCGATGGAGTCCTTCCATTCTATCTAGATAAGGAATCCTGGAAATGCGTGATCTGCGATGAAAAGTTCAACAATTTCCTCAAACTCTACGAACATATGAACGTACATTACCAGCATTATATATGTGCTATATGCGGTAAAGGGTATATGACGGGACCGCGGTTAAGGAAGCATTCAGAAGTCCACGTTTCAGGCACCTTTCCCTGTCCCGATTGTGGTAGAGTCTTTACTATGAGAGCTGCTAGAGATTCACATAAAGCAACGTCACATTCTAAAAGTTCACGATACGAGTGTCCGCATTGCTACATCAGATTTGACAGCTATTATCATAGAATGGCGCATTTGAAAGATGTTCACAGTGAGAAGGAAGTTGTGTATAGTTGTACGCACTGTGAACTTACCTTTAAGACTAGCGGTAAGCGAGCCGCTCATGTTCGCTCCGTCCATATACTCCCGAAGCATGATTTCAGCTGTGATTTCTGCGAGTGGCATTTTAGAACGAATTATGAACTGAAGCGACACATGGTTAGGCATACTGGGGAGAAGAACTTTCATTGTTATGTGTGTGGGAAGTCTTTTCCGAGGAATAGGGCTTTGTTGACGCATTTGAAGACGCATCAGGATCTTAATTGCAAGTGGTGCGGGCTGGTTTTTAAGCAGAAGAGTTCAGTTAATGATGCTGGGTCAGGGCTAGGTAAGGCTAGACGGTTAAAAGAGAACGTAAGCGAACGACAAATGCGTAGGCGACGTCGCGCAAACAACGAGTTGCCTGAGGAGTCTGAGAAAAGACTGGCGAAGACTATGATGAGACGGAACGCTCTGACGATTCTAGAGAGTTCCACCGCATGGGCCTTCCGCTGGTATCATGGAGCGTTCTACTGCGCCTACTGTGATACCAAATTCGTAGATATAAGCCTACTAAGAGAACATGTCACCAAACACCTTTATGAACCACCAAACAAAACAGTATTCACGAAACTTAAAGAAAGCAACATGGTCAAAATAGATATCGGCAATTTACATTGTAGATTATGCGATGAGATTATAGATAACGTAACAGATCTTAAGACCCATATTGTATCGCACGGAAAAGTTATCCGTGATAATTATAGCGATGGTGTTTTACCATTTAAACTCAATGATAATAACTGCTTCTATTGCCAACTGTGCACAGCTCAGTTCGCTACTTTTGGCAAAATAAACGAACATATGAACACACATTATCAGAACTACGTGTGTGATAATTGCGGTAAAGGATTCGTCACTAAAGCCAGATTCAGATCGCATTCCCAAACGTGTCTCAGCGATTTAACTGAAACGGGTGATTTTCTATGCGGTATATGCAACGCGTCTTTCAGCACCAAAGCGGAAAGACTTGCTCACCGTTCGAAAATCCATCGCAAAGGAGTTAGGTATAACTGTCCGCGATGCTCTGAAGTATTTACTACTTATCACGCCAGAGCAAATCATCTGGTTAACTTTCACGCTGAGCAAAGCAGGGAATATTCCTGCTCTGCTTGTGACAAGACATTTAATACAAGTTCTAAACGCGCAGCTCATTTTAGAATCATGCACAAAACTCCAGTTCAAACAGACAGCCACCAGTGTTATTATTGCTCAGCATATTTCCCGACTAAATGGAGACTGGGAAGGCATATGAAATCTCACGAGCGTAAAATCTGA
- Protein Sequence
- MNRNLIVFLFLGCGQIIGRTKFVKVGDKYLEVKPKPKYQRSTRAEARIATKKNATSILQCWTFTPFRWKKNKFRCAYCEEDFTECHSLRDHIKLCATEHDIKDIYNKFKEMSLINVDTTDAECTICSELFTDIKQMREHVIQHGFEFDTKHPDGVLPFYLDKESWKCVICDEKFNNFLKLYEHMNVHYQHYICAICGKGYMTGPRLRKHSEVHVSGTFPCPDCGRVFTMRAARDSHKATSHSKSSRYECPHCYIRFDSYYHRMAHLKDVHSEKEVVYSCTHCELTFKTSGKRAAHVRSVHILPKHDFSCDFCEWHFRTNYELKRHMVRHTGEKNFHCYVCGKSFPRNRALLTHLKTHQDLNCKWCGLVFKQKSSVNDAGSGLGKARRLKENVSERQMRRRRRANNELPEESEKRLAKTMMRRNALTILESSTAWAFRWYHGAFYCAYCDTKFVDISLLREHVTKHLYEPPNKTVFTKLKESNMVKIDIGNLHCRLCDEIIDNVTDLKTHIVSHGKVIRDNYSDGVLPFKLNDNNCFYCQLCTAQFATFGKINEHMNTHYQNYVCDNCGKGFVTKARFRSHSQTCLSDLTETGDFLCGICNASFSTKAERLAHRSKIHRKGVRYNCPRCSEVFTTYHARANHLVNFHAEQSREYSCSACDKTFNTSSKRAAHFRIMHKTPVQTDSHQCYYCSAYFPTKWRLGRHMKSHERKI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -