Basic Information

Insect: Chloroclystis v-ata
Gene Symbol: -
Assembly: GCA_963691955.1
Location: OY829907.1:994435-996831[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 2.1e-05 0.0014 19.4 0.2 1 20 419 438 419 440 0.94

2 11 1.1e-05 0.00078 20.2 5.0 3 23 481 501 480 501 0.98

3 11 2.1e-07 1.5e-05 25.6 1.9 1 23 507 529 507 529 0.99

4 11 6.1e-06 0.00042 21.0 1.2 1 23 535 557 535 557 0.97

5 11 0.0001 0.0069 17.2 1.6 1 23 563 585 563 585 0.97

6 11 0.078 5.4 8.1 0.1 1 23 591 613 591 613 0.94

7 11 2.2e-05 0.0015 19.3 4.9 1 23 619 641 619 641 0.98

8 11 2.8e-06 0.0002 22.1 9.2 1 23 647 669 647 669 0.99

9 11 0.00017 0.012 16.5 0.3 2 23 676 697 675 697 0.96

10 11 1.2e-07 8.3e-06 26.4 1.2 1 23 703 725 703 725 0.97

11 11 3.5e-05 0.0024 18.6 2.3 1 23 731 753 731 753 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	2.1e-05	0.0014	19.4	0.2	1	20	419	438	419	440	0.94
2	11	1.1e-05	0.00078	20.2	5.0	3	23	481	501	480	501	0.98
3	11	2.1e-07	1.5e-05	25.6	1.9	1	23	507	529	507	529	0.99
4	11	6.1e-06	0.00042	21.0	1.2	1	23	535	557	535	557	0.97
5	11	0.0001	0.0069	17.2	1.6	1	23	563	585	563	585	0.97
6	11	0.078	5.4	8.1	0.1	1	23	591	613	591	613	0.94
7	11	2.2e-05	0.0015	19.3	4.9	1	23	619	641	619	641	0.98
8	11	2.8e-06	0.0002	22.1	9.2	1	23	647	669	647	669	0.99
9	11	0.00017	0.012	16.5	0.3	2	23	676	697	675	697	0.96
10	11	1.2e-07	8.3e-06	26.4	1.2	1	23	703	725	703	725	0.97
11	11	3.5e-05	0.0024	18.6	2.3	1	23	731	753	731	753	0.98

Sequence Information

Coding Sequence: ATGGATGATTCCAACCAAGACCCTTGTCAATCAAGAATACAATCTCATACCAATCAAGACCATTGTCAATCAAACATGGAATCTGATACTCATCAAGACCCCCATCAGAATAAAATGCAGTCTAATAAAAAACCACCCGAAATCCAGTCTTATACTGATCTAGATATTCATCAATCTGATATGGGTCAAGACACAATTCTACCGGAAATGCAATGTTTTACTGATCTAGACACAAGTCAACTGGAAATTCCGTCCTTTACCGATCTAGTCACCGATCTACCGGAAGTGTCTTTCACCGATCTAGTCACTGGTCTACCGGAAATGTCGTTTGCCGAACTAGTCACCGGCCAAACGGAAATTCCGTCTTATACCAATCTAGTAGTCAGTCAACAGGATGTATCTTATACAGATCTAGTAACTTGTCCACCTGAAATGCAGTCTGATAACAGTCAAGGTGGTGCTCATAGAATGCAATTTAATACCAGTGAAGAGAGTCAATCAACAATATCTGCTCCCAATCAAGATCCTCGTCAGTATAGAATGGAGTCTGCTAACAATGAAGAAAGTGCTCAATCAACAACACATTCTCCCCATGTAGATAGTGGTCAATGCAAAATAAATTCTGACAGTCATGACAATTGTCAATCTTCAATGCACTCTGATACCAATCAAGACTGTCAATATGATGAGAATTGTCAATATTGTATAGAATCTGAGAATAATCAAGACAACTGCCAATATGATGAGAATTGTCAATACTGTATAGAATCAGAAACTAATCAAGACAGTTGTCAATATGATGAGAATTGTCAATACTGTGTAGAGTCTAAGAACAAAGACTCTTGTCAATCTACAATGCCCACCAATGAAGATGCTAGTCAAAATAGATCGGAGCCTGATAACAATCAAGACAACAGTCAAATGAGGTTGGACTCTAATAACCATCTAGATAATAGTCAATCTAGATTGGACTCGGATGATTTAGAGAATAGACAACATAGAACAGACTCTGATAACAATCAAGTTAAGAGCCAATATAGAATGCACACTGAAGCAAACGAAATTGCCAAGAGCCCAGACAAAAAAGTTGCGGAACGCGGTCCAATCAAATACGGTTCTCGAAGTagttcatcgtcatcatcatcatcatcatcgtcgtcGTCATCGTCTTCTTCATCAGGTTCTTCTTCGTCTTCTGACTCTTCGGACAGTTCGTctgatgaagatgatgatgcgAAATCAAAAAAGACTATATTCTCTTGTGATACATGCGGGAAAACTTTCCCTACGGAATATAATCTGTCAAATCACACAGAAATTTGTATTAAGCTATCCAGAACTAAAGTCAAGCTGGCAGAACCTGTGGTAGAAGTGCCGAAAGAAAAAATAGTTCCTATTGAAAAAGTTAAGAAACCTCCAGCCCCAAAGCCCAGAGAAATATGTTCCGTTTGCAAAAAAGATTTCATTCATAAGTCTCATTTGACACTTCATATGAGAACGCACACAGGCGAACGCCCTTACAGTTGTACTGAGTGTAATAAGCAGTTCAGTAGCAGAGATTACTTAGTGAAGCACATTAGAACTCACACCGGTGAGAAGCCCTACGCCTGTGCCCTCTGTGATAAACAATTTAGTTCCATGAGTAACCTCGTGAGGCATCATCGAGTACACACGGGCGTTAAACGCTTCGCTTGTGAAATCTGTGATAAAGAGTTCAGTCTCAAACAGCATTTGGAAATACACTTCCAAAAACACATGAATGAAAAGACTTTTGTTTGTATAGTGTGCGATAGAGGATTCAGTTCTAAGACAATCCTGCTTAAtcacataacaatacatacAGGAGATAAAGCGTTTAGCTGTACTGTGTGCCAAAAGAAGTTCAGTAGGAAAATGCACTTGGACAATCATATGACAACACACACAGGTGATAAGCCCTTTGAATGTGACACGTGCGGGAAATGTTTCAGTCGTAAGTGTCATTTGGAATACCatatgaggactcacactaaACAGAAACCCTTGGTATGCACTGTCTGTAATAAACAATTCAGTGGACAGTCAGCCTTGgataaccataaaaaaatacattcagGGGAAAAGCCGTTCGCCTGTAAAATGTGCGATAAGAAATTCATTCAAAAATCCCAGTTAGCGAATCATATGAACACTCACTCTGTAGAGAAGCCTTTTCCGTGTTCattgtgtgataagaaatataGTAGGAAGTTTCGTTTGGTGAATCATATGAAAAGCCACCCTGCTCAGAAAGCCACCCACACCACCCCTGCCGATATCCTCAACTCTATGAATACTGTCGTCTCCATAGACAATACTACCATAGACACCACAGTAGCATCCGAACGGACTGAGACTCTAGAATACTTTCAGCTGTAg
Protein Sequence: MDDSNQDPCQSRIQSHTNQDHCQSNMESDTHQDPHQNKMQSNKKPPEIQSYTDLDIHQSDMGQDTILPEMQCFTDLDTSQLEIPSFTDLVTDLPEVSFTDLVTGLPEMSFAELVTGQTEIPSYTNLVVSQQDVSYTDLVTCPPEMQSDNSQGGAHRMQFNTSEESQSTISAPNQDPRQYRMESANNEESAQSTTHSPHVDSGQCKINSDSHDNCQSSMHSDTNQDCQYDENCQYCIESENNQDNCQYDENCQYCIESETNQDSCQYDENCQYCVESKNKDSCQSTMPTNEDASQNRSEPDNNQDNSQMRLDSNNHLDNSQSRLDSDDLENRQHRTDSDNNQVKSQYRMHTEANEIAKSPDKKVAERGPIKYGSRSSSSSSSSSSSSSSSSSSSGSSSSSDSSDSSSDEDDDAKSKKTIFSCDTCGKTFPTEYNLSNHTEICIKLSRTKVKLAEPVVEVPKEKIVPIEKVKKPPAPKPREICSVCKKDFIHKSHLTLHMRTHTGERPYSCTECNKQFSSRDYLVKHIRTHTGEKPYACALCDKQFSSMSNLVRHHRVHTGVKRFACEICDKEFSLKQHLEIHFQKHMNEKTFVCIVCDRGFSSKTILLNHITIHTGDKAFSCTVCQKKFSRKMHLDNHMTTHTGDKPFECDTCGKCFSRKCHLEYHMRTHTKQKPLVCTVCNKQFSGQSALDNHKKIHSGEKPFACKMCDKKFIQKSQLANHMNTHSVEKPFPCSLCDKKYSRKFRLVNHMKSHPAQKATHTTPADILNSMNTVVSIDNTTIDTTVASERTETLEYFQL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -