Cv-a017312.1
Basic Information
- Insect
- Chloroclystis v-ata
- Gene Symbol
- -
- Assembly
- GCA_963691955.1
- Location
- OY829907.1:3474781-3477291[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 3.4e-05 0.0023 18.7 2.6 1 23 172 195 172 195 0.96 2 15 3.3e-06 0.00023 21.9 4.4 1 23 201 223 201 223 0.98 3 15 4e-05 0.0027 18.5 1.7 1 23 229 251 229 251 0.98 4 15 1.8e-05 0.0012 19.6 3.0 1 23 257 279 257 279 0.98 5 15 0.0012 0.081 13.8 0.1 1 23 287 309 287 309 0.96 6 15 1.6e-05 0.0011 19.7 0.9 1 23 315 337 315 337 0.97 7 15 0.00021 0.015 16.2 5.2 1 23 343 367 343 367 0.98 8 15 0.00015 0.01 16.6 0.5 1 23 373 395 373 395 0.97 9 15 2.1e-08 1.5e-06 28.7 0.8 1 23 401 423 401 423 0.98 10 15 0.0003 0.021 15.7 0.2 2 23 430 451 429 451 0.96 11 15 1.5e-08 1e-06 29.2 0.8 1 23 457 479 457 479 0.98 12 15 5.9e-05 0.0041 17.9 3.1 1 23 485 507 485 507 0.98 13 15 7.6e-05 0.0053 17.6 1.6 1 23 513 535 513 535 0.98 14 15 0.00015 0.01 16.7 0.6 1 23 541 563 541 563 0.96 15 15 0.00016 0.011 16.6 5.4 1 23 568 591 568 591 0.97
Sequence Information
- Coding Sequence
- ATGTCTGTGTGTCGAGCCTGCCTGAGTGGTGACCTACAGCTTATCCCTGTGGACAACAGTTTACTTATCGGCATTTACGACAAAATATCAAGCCGCGAGttcTGTGCTGAAGATGAGCGTCCAAAAGCCGTGTGCTATTTCTGCCATCAGAAGCTTCTCAAATGCCACATCTTCTCTGAGATGGTGCACAGATCTGAACAGATCTTTAGTGAAATTCTCCTTAATGGTGCACTTGAGatccAGTTTACTGAGCTCAATCAAAAAGCAAAACCATACTTATCTCTAACGCCCGTGCGAACAGAAGACATAACCAACCAATTTCAATACCCAGTTAAACCGGAACAAGTTACAATTAAACTAGAAACAATTGAACAAGAAACTGAAACTGTAGAAATTAAAACGGAGGACATATCTGACTTCATCAAGACTGAGGTAGAACAAGATGAAATAGCAATTGAATATAGCAAAGAGGAAAAATCATGTAAAGATGATAATGAAGTCATTGATAGGCCGTACGCATGTTCATcatgtaataagaaatttacTGATAACTGTAATCTTGTGAGACATGTAAGACAGGTGCATATGAAAGTGTTGCGGTTCCATTGCAAGATTTGTAACAAACAATTCGCGGAGAAATCCAACATGACCCGCCATTTAAGAACACACACTAAAGAGAAACCGTTTCCCTGTATGTACTGTGACAGCAAGTTCAGTCACAAAACCAGCTTAATTGACCACATACGAATACATACGGGTGAAAAACCTTATGAATGTAGTACATGTCAAAAGAAATTCTCCCTTAAAAAATCTCTGAAAGAACACATGAAGCtccataaaaaaaatgtaaatagatCCTTCGCTTGCACACTCTGTGAAGCACAGTTTAGTGATAAAGCAGACTTGGTCAATCATAAAATCAGTCATGTAGGTGTAAAGTTATATACTTGTGCTAAATGCGATAAAGTTTATGAGTTTCAGTCACAATTGGATCGTCATATGACGTTGCATGATCGAGAAACTTGTTACACTTGTAACGTTAATGACTGCGGCAGAACATTCAAtcacaaacataaatatgaTGATCATTTacggactcacactggagaaaaGCCTTTTGCTTGTTCGCAGTGTGACAAACGGTACGGTTATAAGAGCAGCTTGTTAGAACATCTTATATCTCACTCTGGAGAAAAGCCGTTTCCTTGTACAATCTGtgataaaaagtttattagtaATTCACAATTGCAGAGACATCTACGAATTCATATAGCTGATAAAACGGTGTCATGTGTGTTGTGTGGTAAGCAATCATACACAAAAGCTGAAATGGAAAAGCATATGAGGATCCACACTGGAGAAAAGCCATATGCTTGTACACTATGTGGCAGGAAGTTCACTGTTAATTCTAATTTGATCCGGCACATGAGAACTCATACAGGTATCCAGCCATATTCTTGTTCGGTGTGTCGTAAACAGTTTTGCGATAAGACGGGTATGGTTAAACATATGCGGGTACACACTGGAGAAAAGCCTTATAAATGCTCCATCTGTGAAAAGCCATTTAGAGAGCGAACGGGCCTTATTCACCATGAACAAAAACATAGTGGGGAAAGGCCTTTTGCTTGTGATATTTGTGGTAAAGACTATGTCTTGAAAACaagtttaaacaaacataagAAGTTACACACAGATCAAGCTTATATTTGTGatatttgtaataaacatTACAAGGAGCGGTCATGTTTGGTTAAACATATGAAGAAGATGCACTTGTCTACTTAA
- Protein Sequence
- MSVCRACLSGDLQLIPVDNSLLIGIYDKISSREFCAEDERPKAVCYFCHQKLLKCHIFSEMVHRSEQIFSEILLNGALEIQFTELNQKAKPYLSLTPVRTEDITNQFQYPVKPEQVTIKLETIEQETETVEIKTEDISDFIKTEVEQDEIAIEYSKEEKSCKDDNEVIDRPYACSSCNKKFTDNCNLVRHVRQVHMKVLRFHCKICNKQFAEKSNMTRHLRTHTKEKPFPCMYCDSKFSHKTSLIDHIRIHTGEKPYECSTCQKKFSLKKSLKEHMKLHKKNVNRSFACTLCEAQFSDKADLVNHKISHVGVKLYTCAKCDKVYEFQSQLDRHMTLHDRETCYTCNVNDCGRTFNHKHKYDDHLRTHTGEKPFACSQCDKRYGYKSSLLEHLISHSGEKPFPCTICDKKFISNSQLQRHLRIHIADKTVSCVLCGKQSYTKAEMEKHMRIHTGEKPYACTLCGRKFTVNSNLIRHMRTHTGIQPYSCSVCRKQFCDKTGMVKHMRVHTGEKPYKCSICEKPFRERTGLIHHEQKHSGERPFACDICGKDYVLKTSLNKHKKLHTDQAYICDICNKHYKERSCLVKHMKKMHLST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -