Cv-a020434.1
Basic Information
- Insect
- Chloroclystis v-ata
- Gene Symbol
- -
- Assembly
- GCA_963691955.1
- Location
- OY829910.1:5479156-5483812[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 0.032 2.2 9.3 0.5 1 23 33 56 33 56 0.94 2 27 0.031 2.2 9.3 0.1 3 23 88 109 86 109 0.94 3 27 0.25 17 6.5 2.0 2 23 132 153 132 154 0.94 4 27 0.0023 0.16 12.9 3.4 1 23 159 182 159 182 0.97 5 27 1.6 1.1e+02 4.0 0.1 1 23 187 210 187 210 0.89 6 27 0.00031 0.021 15.7 1.0 1 23 215 238 215 238 0.94 7 27 0.00081 0.056 14.3 0.4 2 23 246 268 245 268 0.97 8 27 0.18 12 7.0 0.0 2 23 275 296 274 296 0.96 9 27 8.6e-08 5.9e-06 26.8 1.2 1 23 302 324 302 324 0.97 10 27 2e-06 0.00014 22.5 2.1 1 23 330 353 330 353 0.98 11 27 0.79 54 4.9 0.0 3 23 487 508 485 508 0.93 12 27 0.0046 0.32 12.0 1.7 2 23 528 550 527 550 0.96 13 27 8.6e-06 0.0006 20.5 1.0 1 23 555 578 555 578 0.97 14 27 0.019 1.3 10.0 4.8 1 23 581 604 581 604 0.95 15 27 0.0015 0.1 13.5 0.6 1 23 610 633 610 633 0.95 16 27 0.00075 0.052 14.4 0.5 2 23 641 663 640 663 0.96 17 27 0.26 18 6.5 0.6 1 23 668 690 668 690 0.97 18 27 1.7e-06 0.00012 22.8 0.3 1 23 696 718 696 718 0.98 19 27 0.072 5 8.2 0.2 1 23 787 809 787 809 0.96 20 27 0.17 11 7.1 0.2 2 23 835 857 834 857 0.96 21 27 0.54 37 5.5 0.1 3 23 881 902 879 902 0.93 22 27 0.00066 0.045 14.6 0.2 3 23 910 931 909 931 0.97 23 27 0.0015 0.1 13.5 0.6 3 23 938 959 937 959 0.95 24 27 0.01 0.72 10.9 2.3 1 23 965 988 965 988 0.98 25 27 0.001 0.07 14.0 2.1 2 23 995 1017 994 1017 0.95 26 27 0.024 1.6 9.7 1.3 1 23 1023 1045 1023 1045 0.94 27 27 0.015 1 10.3 1.2 1 23 1051 1074 1051 1074 0.89
Sequence Information
- Coding Sequence
- ATGGAAATAGCCCGTAAGTTGCTCAATAAACGGCGAAACGTTGAGTACATACTACAATACAGTAACGTTACACCCTTCATGTGGGACAAGGCAAAGTATAAATGCTTCTATTGCGCGGAAACTATGAGAGACCCGGCCTATCTAAGAAAACACACTTCAGAAGTCCACGAAAACGACAATCTAGAACTTATTATCTATGATAGAACTAAAAATAATCGTAACAAAGATGCTGCAATTAAAATTGATGTTACTGATATAAATTGCAAGCTGTGTCCACAAGCGTTGAATTCTCTAGAAGAACTTAtacatcatattattatagctCATGATGCTGATTATAATGTTAACGTGCCGAATTGTGTTCTACCTTTTAAACTTGATAAAGAGACACCAACTTGCGCTACATGTGACAGCAAATTCGCTTTCTTTGAATACCTCTTACGACACGCAAACAAACACCATCTATCACATCAATTCGTTTGTGATGTTTGTGGAACGAGCTTTCAAGGAGAGAATCATTTGAAAATGCATCACAGATATTATCATAGAGAAGGAGGGTATATTTGCGATGTGTGTGGAGTAAGTCTTCAGACATTGTCCAAGAAGATATTGCATGAGAAGAATATACACTCTGTTAATCTGTACACTTGCCCGCATTGTCCGGAGACATTCAAAAGTCCGTATCTAAAGAAGCTACATTTAGCCAACGATCATGGAGTCGAAGAGTTGAAGATAAAGTGTCCTTATTGCTTCAAGATATTTCCCCAGGAAAGTATAATGTCAAGACACATGAGACGGGTACATTTGCGGGAAAAAAACGTTGAATGCGCGGTATGCGGGGATAAATTCTTCGGTCCGTACGATGTGAAACTACACATGCTCAAGCATAACGGggataaaaagtttatatgcACGATTTGCGGGAAGAAATTCTCTAAAAAGAGCAATCTTAACACCCACATGATTTTGCATACGAGAGAGAAGAATTACTCGTGTCAGCTTTGCGATAGATCTTTTGCTCATCAAGCTACGTTGAAGATACATATGCGAAGTAGACACCAGGATTTGGGGTATCAGGTTGATGGGACTAGTACTGTTTTTGAGGGACAGTATGCTTCGGATGAGGTGATTATAGAAGGCTTAGAGAATGAGGGAATTGAAGTTATTGAGGGTctcaatgatgatgaaatcaCGGAGCTTATTGCTCAGGATAACCCCAGCTACCTGGACCGCCTCACCATAATAAGACAGAATATACTGACCGTCTTACGTTACACAAACGTTATCCCTTTTAACTGGAATACTAGGAGATTCCGCTGTTTCTTCTGCACGAAAGAACTCCGTGACATCGAGATAAGAGAACATACAGACAAGCATTGCCCAAACTTAGAACGCTTCGTCAAGAAAAACATCATTAGGAAAGACGTTCCTATCAAAATTGATGTCACAGACTTAGCTTGTAAAGTTTGCGTTATCCCTTTCGCATCATTCGACGATATAATCACCCATATAATTAATGAACACGAACCTTACGATATCAATACAGAGCTATGTTTCTTTCCGTTAATTCTGAGAGTGAAGCAATGTGCTCTCTGCGGCACATGCTTTGATAACTTCCCCACGCTTATAACCCATATGTACAAACAGCATGTCGCACGGTCCTTTATGTGCCAAGTCTGCGGACAAAGCTTCAAAGATAAAGTCCGTCTGAATAGACACATCACAACCTCACATGTAGGACATCGATGCACCATTTGCGATAAAATCTTCGACGCTTACCACAAACTAGAGAAGCACAAGGAAAAGTTTCACGGTCATATCAAAACTTATAGTTGTgacctctgtgagagcaatttcaGGAGTAATTACCAGCTTAGAGTTCATTTAGGGAGAGATCATAACGTACAGAAGTATAGAATTAAATGTGATCTATGTGATAAGGTGTGTACGACGAAAGGTGCGATGGTCTTGCATATACAAAGTTTGCATTCTGAAGCTAAATTCAAATGTGACCAGTGTGATTATGCTACCGGGATTAAATGGTTGGTTAAGCTTCATAAACGGAAGCATACAGCGGTTAAGGATTACTCTTGTAGTGTATGTGTGAGAGCGTTCGGGCGTTCTAGTAATCTGCGAGCCCATATGAAGATTCACTCTGGAGAACCTAGAGGTGGCCAGAAAGCAAAACCAATCGTTAAATCGCCCTCGCCCAAGCGAAGCCTGGCGCCGGCAGCTAGCGTGCTCGCCGCCAGACCTAAGGGTCTCTCCTCCAAGGAGAAACGAAGAATTATGATCAATAATGTCCTCGCGATACTCCTTAAGACAACAGCCATGCCTTTTAGATGGCTCAAGAGCTCTTACCGATGTTTCTACTGCTACGATATCTTCCAAGAAGCCTCGGATCTCAAGGCACACCAAGCCGCTCATACAGACGACAGCGTCAAAGAAAAAGCCATGAATAATTACTGGGAACCtgttgtttacatcgatataTCGAATATGAAATGTCTACATTGCCCTGAAGAGGTCAACGACCTGTACGATATGATAGACCATCTAATTACCAGACATAGCGTGGATTATAACAAGGATGTAGGGACGTGTATGGTCGCGTTTAAGCTGAATAATTTCGATGTTAGTTGCCTTGCTTGTGGAGCTAGCTTCTACTCTTTCGGTCCGTTATTAAATCATACTAACAAAGACCATAAAGGGGCTTCGGTGATTCTCTGCGAGATATGTGGACAGAATTACAAAGATCAGAACTTACTGCGTCTTCATGTTAAATCCGCGCATGATAACAGCGGAATGCTTTGCCCCGAATGCGGGGATAAATTCGAAACGCGTTCCAAACTCAAAACACATCAGATCAACAACCATGGAGTGGAGCGTAAGTTCAAATGCTTGGTCTGTGATCTCACTTTCGGCAGCCATTATAAACGATCACGTCATATGGCGACGGACCATAAAAACCGACAGGAGATTAAATGTCTTCATTGTCCGAAGACGTTCGTCTTTCGTAGTATGATGATGACCCATTTACGTGACAGCCATCTGAAAGTACGCAATCATATCTGTGGGATTTGCGGATGGAAGGCTTTTAACAGTAATAGGTTGAAAAACCATATGTATAAGCATAGCGGAGAGAAGAATTTCAAATGTGACTCGTGTGATAAAGCTTTCACGACGAGGAAGATTATGAAGGCGCATTTTGCTAGGATGCATAAGGCACCGACTGCTCCAGTGCCAATTATGACACATTACCCATATGGTCATGGACCTCAGTGA
- Protein Sequence
- MEIARKLLNKRRNVEYILQYSNVTPFMWDKAKYKCFYCAETMRDPAYLRKHTSEVHENDNLELIIYDRTKNNRNKDAAIKIDVTDINCKLCPQALNSLEELIHHIIIAHDADYNVNVPNCVLPFKLDKETPTCATCDSKFAFFEYLLRHANKHHLSHQFVCDVCGTSFQGENHLKMHHRYYHREGGYICDVCGVSLQTLSKKILHEKNIHSVNLYTCPHCPETFKSPYLKKLHLANDHGVEELKIKCPYCFKIFPQESIMSRHMRRVHLREKNVECAVCGDKFFGPYDVKLHMLKHNGDKKFICTICGKKFSKKSNLNTHMILHTREKNYSCQLCDRSFAHQATLKIHMRSRHQDLGYQVDGTSTVFEGQYASDEVIIEGLENEGIEVIEGLNDDEITELIAQDNPSYLDRLTIIRQNILTVLRYTNVIPFNWNTRRFRCFFCTKELRDIEIREHTDKHCPNLERFVKKNIIRKDVPIKIDVTDLACKVCVIPFASFDDIITHIINEHEPYDINTELCFFPLILRVKQCALCGTCFDNFPTLITHMYKQHVARSFMCQVCGQSFKDKVRLNRHITTSHVGHRCTICDKIFDAYHKLEKHKEKFHGHIKTYSCDLCESNFRSNYQLRVHLGRDHNVQKYRIKCDLCDKVCTTKGAMVLHIQSLHSEAKFKCDQCDYATGIKWLVKLHKRKHTAVKDYSCSVCVRAFGRSSNLRAHMKIHSGEPRGGQKAKPIVKSPSPKRSLAPAASVLAARPKGLSSKEKRRIMINNVLAILLKTTAMPFRWLKSSYRCFYCYDIFQEASDLKAHQAAHTDDSVKEKAMNNYWEPVVYIDISNMKCLHCPEEVNDLYDMIDHLITRHSVDYNKDVGTCMVAFKLNNFDVSCLACGASFYSFGPLLNHTNKDHKGASVILCEICGQNYKDQNLLRLHVKSAHDNSGMLCPECGDKFETRSKLKTHQINNHGVERKFKCLVCDLTFGSHYKRSRHMATDHKNRQEIKCLHCPKTFVFRSMMMTHLRDSHLKVRNHICGICGWKAFNSNRLKNHMYKHSGEKNFKCDSCDKAFTTRKIMKAHFARMHKAPTAPVPIMTHYPYGHGPQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -