Cv-a007634.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Chloroclystis v-ata
Gene Symbol
RTase
Assembly
GCA_963691955.1
Location
OY829900.1:4221348-4238202[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 0.0001 0.007 17.2 0.8 2 23 144 166 144 166 0.97
2 25 1.3e-05 0.00088 20.0 2.7 1 23 172 194 172 194 0.99
3 25 3.9e-05 0.0027 18.5 2.7 1 23 209 231 209 231 0.98
4 25 8.1e-07 5.6e-05 23.8 1.5 1 23 246 268 246 268 0.99
5 25 0.00038 0.026 15.4 2.6 1 23 274 296 274 296 0.98
6 25 2.5e-05 0.0017 19.1 2.1 1 23 325 347 325 347 0.99
7 25 0.082 5.7 8.0 1.8 1 23 354 376 354 376 0.98
8 25 1.4e-06 9.5e-05 23.1 2.3 1 23 382 404 382 404 0.99
9 25 0.095 6.5 7.8 1.8 1 23 411 433 411 433 0.98
10 25 5.6e-06 0.00039 21.1 1.5 1 23 439 461 439 461 0.99
11 25 0.0011 0.073 14.0 0.7 1 23 468 490 468 490 0.99
12 25 6.2e-06 0.00043 21.0 1.9 1 23 496 518 496 518 0.98
13 25 0.0045 0.31 12.0 0.3 1 20 524 543 524 546 0.93
14 25 8.7e-05 0.006 17.4 1.4 2 23 553 574 552 574 0.96
15 25 0.006 0.41 11.6 0.1 1 18 580 597 580 597 0.93
16 25 0.073 5 8.2 0.7 9 23 632 646 630 646 0.95
17 25 0.006 0.41 11.6 0.1 1 18 652 669 652 669 0.93
18 25 0.073 5 8.2 0.7 9 23 1219 1233 1217 1233 0.95
19 25 0.006 0.41 11.6 0.1 1 18 1239 1256 1239 1256 0.93
20 25 0.073 5 8.2 0.7 9 23 1291 1305 1289 1305 0.95
21 25 0.006 0.41 11.6 0.1 1 18 1311 1328 1311 1328 0.93
22 25 0.073 5 8.2 0.7 9 23 1363 1377 1361 1377 0.95
23 25 0.006 0.41 11.6 0.1 1 18 1383 1400 1383 1400 0.93
24 25 0.073 5 8.2 0.7 9 23 1435 1449 1433 1449 0.95
25 25 8e-06 0.00055 20.7 1.4 1 23 1455 1478 1455 1478 0.97

Sequence Information

Coding Sequence
ATGTTGAGAGTTGGAAGAGGAAGTTCAGTATGGAGCAGCATCAGCACCGCCATTAGTTTCCCAGCGCACTGGGGCGTAGGCGTCGGGGGGATGGCGCGGGGCGTGGGGGTCCCCGTGCCACCCCCCGGCGACCTACTCGCCACTATATCCATGTTCGAACAGCAAATCAAAGCTGAACCCAtgaaCTTCTACCACCCCCATGTTACCCACGTCCACTCCGGGCCCCCGACCATAGGGCGGTCAGAGTCCAACCACCACCTCATGAACCCCCATCATCACGAGGACTCGAAGGACAGCCTCATACAACACCAAGTTCAACACCAGCAGGATCTCATGGAACAGCACCAGCAACAGGAAATGCAACAAGATGAtgagtTGAGCTTCAAAGGAATGGAAGATGAAGGTGTTGATATGGATATGGATGGCCGACAATGTTCACAGGTGTGCGACGCGGCATTTTGCCGCAAGCCGTACCTCGAGGTGCACATGCGCACGCACACGGGCGAGCGCCCCTTCCAGTGCGACCTCTGCCTCAAGCGCTTCACGCAGAAGTCCAGCCTCAACACGCACAAGCGAGTGCACACCGATGAGCACTTGCACGCGCTGGTGGCGAAGGACCGGCCCTACAAGTGTGAGCTCTGTCAGATGCGGTTCACGCAGACTTCCAGCCTCAACCGACACAAGAAAATACACACGGAGGAGCACATCCAATCGCTGATCAACAAAGTGCGTCCGTATCAGTGCGACATCTGTGACAAGCGGTTCACGCAGAAGTCCAGCCTTGGCACTCATAAGCGTATACACACTGGGGAGCGGCCGTTCCAGTGCTCCGTCTGCCTCAAGTCCTTCACGCAGAAGTGCGCGCTCAATTTGCACGAAAAGATACATACGGTGCGGGCCCCGGCGGCGCCTCGGCCGCGGGGCGCCCCACTCCCGGACACTCACTTGCGCACGCACACAGGCGAGCGGCCCTATCAGTGCGACGCGTGTCTGAAGCGCTTCACGCAGAAGTCGAGCCTCAATATACATAAGAGGACGCATTCAGTCCAGGGCAGACCGTTCCAGTGCCTGTCCTGTCCCGCCGCCTTCACCTGCAAGCAATACCTGGAGATTCACACGCGCACGCACACCGGCGAGCGGCCCTATCAGTGCGACATCTGCCTCAAACGCTTCACTCAGAAGTCCAGTCTCAACATCCACAAACGGACGCACTCAGTGCAAGGGCGGCCGTTCCAATGCCTGCAGTGCCCGGCCGCCTTCACCTGCAAACAGTACTTGGAGATCCACAACCGCACGCACACCGGAGAGCGCCCCTACCAATGCGACGTGTGCCTCAAAAGATTCGCGCAAAAGTCTACCCTCAACATTCATAAACGAACGCACACAGTGCAAGGGCGTCCGTACCAGTGCATGGAGTGCCCGGCCGCCTTCACGTGCAAGCCGTACCTGGAGATCCACATGCGCACGCACACCGGCGAGCGCCCGTTCGAGTGCGACGTCTGTTACAAACGCTTCACGCAGAAATCCACGCTCAACATCCACAAGCGAATACATACCGGTGAACGTCCATACGCTTGCGATATATGCCAGAAACGTTTTGCTGTGAAGAGCTACGTAACAGCTCATAGATGGTCTCACGTCGCCGACAAGCCGCTGAACTGCGACCGCTGCTCGATGACGTTCACGTCCAAGTCGCAGTTCGCGCTGCACATCCGCACGCACGCGGCCGGCCCGTGCTACGAGTGCAGCGTGTGCGGACGCACCTTCGTACGAGACAGCTATCTCATACGTTCGCGCTGCACATCCGCACGCACGCGGCCGGCCCGTGCTACGAGTGCAGCGTGTGCGGACGCACCTTCGTACGAGACAGCTATCTCATACGGTAACTATATGACGTTCACGTCCAAGTCGCAGTTCGCGCTGCACATCCGCACGCACGCGGCCGGCCCGTGCTACGAGTGCAGCGTGTGCGGACGCACCTTCGTACGAGACAGCTATCTCATACGaattaaagaatataaaaCTGCGTTTAACAATGCTGCCAAAGACCTTAAAACCCTCATtactgaaaatgaaaatgacaCATTTCAACAAAAACTTTCATCACTTTCAGcacataaaaaagataattacTCTCTTTGGAAACTAACAAAAACATTCAAAAGACCGACAACTCATATTCCTCCGCTAAGAAAGAGTTCAAAAGAACCATGGGCCAGAAGCGAAAGGGAGAAGGCTGAATTATTCGCAGAGCATCTAAGTGAAGTATTTACTCCGCACGAACCAACCATGCTGGTGTTCGACGATGAAGTAGACAGATTTCTCGCTAGCGACCAACAATTATCCCTGCCACTAAAACTTGTAACTCCGAATGAACTAAAAAGAACAATATCAAAACTAGAAAACAAGAAAGCACCAGGGTTTGACCTAATAACTGGAGAAATTCTTAAAAACTTACCTAAAAAGCCTTTAGTATTCTTGACTGTGCTATTTAATGCTATCTTCAGAATTTACTACGTACCAAAAATATGGAAAATCTCGACTATATGCATGATTCCAAAACCTGGCAAACCACCAACAGAACCATCTTCATACAGACCTATTAGCCTGCTACCAGTTctgtcaaaattatttgaaaagacAATATTATCTAGAATGAAACCTGTACTAGACAAAGAAAAAATCATACCTGATCATCAATTTGGTTTTCGGGAGAAACATTCTACTGTCGAACAAGTGCACAGAGTAGTTCGCAAAATTAGACAATCACTAGAGGAAAAAGAATACTGTTCTGCTGTATTTCTAGATATACAGCAGGCATTTGATAAGGTCTGGCATGATGGACtactattcaaattaaaaacactGTTACCAAATACACTTTACATGATCTTGAAGTCCTACTTAAAAGATAGAAGACTCCAAGTGAAATATGAAGACGAGTTCTCCAAACTTCATGAAATAAAAGCATCAGTTCCTCAAGGTTCCGTACTTGGTCCAGTACTTTACTCAATATATACGGCAGACTTACCTGAGACACAAGACGTAGTAACAGCAACATACGCTGATGACACTGCTTGTCTGGCAAGTGACAAAGATTCTGCTAAAGCATCTGCTAAACTGCAGGCTCAATTGGACAAAATAGATATATGGCTTCGAAAATGGAGAATTAAACCCAGTGTGACAAAATCTACACAAGTAACCTTTACTCTCCGAAAAGGGAACTGTGCGCCCGTCCATATGGAACAGAAAACACTGCCGACAAATGACACAGTTAAATATTTGGGACTTCACCTTGACAggagattaacttggacaaaacacataaaaacaaaacgaacaGAAGCAAACATGCAATTCAAAAACTTCGCTTGGTTATTGGGTCGCCAATCGCGTCTCTCTGCCGAAAACAAACTTCTGATATATAAGACCATCATTAAACCGATCTGGACTTATGGCATAGAACTATGGGGATCAGCAAGCAACTCCAACATAGAAATACTGCAAAGATTTCAGAACATCGCCCTAAGAACTGTATCCAGTGTACATTGTTCGCGCTGCACATCCGCACGCACGCGGCCGGCCCGTGCTACGAGTGCAGCGTGTGCGGACGCACCTTCGTACGAGACAGCTATCTCATACGGTAACTATATGACGTTCACGTCCAAGTCGCAGTTCGCGCTGCACATCCGCACGCACGCGGCCGGCCCGTGCTACGAGTGCAGCGTGTGCGGACGCACCTTCGTACGGGACAGCTATCTCATACGTTCGCGCTGCACATCCGCACGCACGCGGCCGGCCCGTGCTACGAGTGCAGCGTGTGCGGACGCACCTTCGTACGAGACAGCTATCTCATACGGTAACTATATGACGTTCACGTCCAAGTCGCAGTTCGCGCTGCACATCCGCACGCACGCGGCCGGCCCGTGCTACGAGTGCAGCGTGTGCGGACGCACCTTCGTACGAGACAGCTATCTCATACGTTCGCGCTGCACATCCGCACGCACGCGGCCGGCCCGTGCTACGAGTGCAGCGTGTGCGGACGCACCTTCGTACGAGACAGCTATCTCATACGGTAACTATATGACGTTCACGTCCAAGTCGCAGTTCGCGCTGCACATCCGCACGCACGCGGCCGGCCCGTGCTACGAGTGCAGCGTGTGCGGACGCACCTTCGTACGAGACAGCTATCTCATACGTTCGCGCTGCACATCCGCACGCACGCGGCCGGCCCGTGCTACGAGTGCAGCGTGTGCGGACGCACCTTCGTACGAGACAGCTATCTCATACGGTAACTATATGACGTTCACGTCCAAGTCGCAGTTCGCGCTGCACATCCGCACGCACGCGGCCGGCCCGTGCTACGAGTGCAGCGTGTGCGGACGCACCTTCGTACGGGACAGCTATCTCATACGGCACCACAACCGCGTGCACCGCGACAACCACAGCAACCTGTCGGCGAGCAGCCTCGCCCTGAACAGCGTCGCCACCAACACCAACTCCAACAACGGCGGCTTCGACTCGCCCGGCGTCTGTGACTTGAGCTTCGTTCCAATGGTGAACCGTTACATGACGTCGCAGGGCACGCAGGTGTCCATGCAGGACGCGCAGAAGATGCAGGCCATGTCTCCGCAGTCCATCGCTTCTATTTCCTCCCCTCCCCCTCCGCACACGCCGACGCCGCAGCCGATGTCTGGTCCACTGCACATGGCGGAATGA
Protein Sequence
MLRVGRGSSVWSSISTAISFPAHWGVGVGGMARGVGVPVPPPGDLLATISMFEQQIKAEPMNFYHPHVTHVHSGPPTIGRSESNHHLMNPHHHEDSKDSLIQHQVQHQQDLMEQHQQQEMQQDDELSFKGMEDEGVDMDMDGRQCSQVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHLHALVAKDRPYKCELCQMRFTQTSSLNRHKKIHTEEHIQSLINKVRPYQCDICDKRFTQKSSLGTHKRIHTGERPFQCSVCLKSFTQKCALNLHEKIHTVRAPAAPRPRGAPLPDTHLRTHTGERPYQCDACLKRFTQKSSLNIHKRTHSVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYQCMECPAAFTCKPYLEIHMRTHTGERPFECDVCYKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCDRCSMTFTSKSQFALHIRTHAAGPCYECSVCGRTFVRDSYLIRSRCTSARTRPARATSAACADAPSYETAISYGNYMTFTSKSQFALHIRTHAAGPCYECSVCGRTFVRDSYLIRIKEYKTAFNNAAKDLKTLITENENDTFQQKLSSLSAHKKDNYSLWKLTKTFKRPTTHIPPLRKSSKEPWARSEREKAELFAEHLSEVFTPHEPTMLVFDDEVDRFLASDQQLSLPLKLVTPNELKRTISKLENKKAPGFDLITGEILKNLPKKPLVFLTVLFNAIFRIYYVPKIWKISTICMIPKPGKPPTEPSSYRPISLLPVLSKLFEKTILSRMKPVLDKEKIIPDHQFGFREKHSTVEQVHRVVRKIRQSLEEKEYCSAVFLDIQQAFDKVWHDGLLFKLKTLLPNTLYMILKSYLKDRRLQVKYEDEFSKLHEIKASVPQGSVLGPVLYSIYTADLPETQDVVTATYADDTACLASDKDSAKASAKLQAQLDKIDIWLRKWRIKPSVTKSTQVTFTLRKGNCAPVHMEQKTLPTNDTVKYLGLHLDRRLTWTKHIKTKRTEANMQFKNFAWLLGRQSRLSAENKLLIYKTIIKPIWTYGIELWGSASNSNIEILQRFQNIALRTVSSVHCSRCTSARTRPARATSAACADAPSYETAISYGNYMTFTSKSQFALHIRTHAAGPCYECSVCGRTFVRDSYLIRSRCTSARTRPARATSAACADAPSYETAISYGNYMTFTSKSQFALHIRTHAAGPCYECSVCGRTFVRDSYLIRSRCTSARTRPARATSAACADAPSYETAISYGNYMTFTSKSQFALHIRTHAAGPCYECSVCGRTFVRDSYLIRSRCTSARTRPARATSAACADAPSYETAISYGNYMTFTSKSQFALHIRTHAAGPCYECSVCGRTFVRDSYLIRHHNRVHRDNHSNLSASSLALNSVATNTNSNNGGFDSPGVCDLSFVPMVNRYMTSQGTQVSMQDAQKMQAMSPQSIASISSPPPPHTPTPQPMSGPLHMAE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-