Cv-a017210.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Chloroclystis v-ata
Gene Symbol
-
Assembly
GCA_963691955.1
Location
OY829907.1:2571038-2580412[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 36 0.68 47 5.1 11.0 1 23 264 286 264 286 0.98
2 36 0.027 1.9 9.5 0.1 1 21 292 312 292 313 0.94
3 36 0.00012 0.0082 17.0 0.9 2 23 316 337 315 337 0.96
4 36 0.00012 0.0082 17.0 0.9 2 23 346 367 345 367 0.96
5 36 0.00012 0.0082 17.0 0.9 2 23 376 397 375 397 0.96
6 36 0.00012 0.0082 17.0 0.9 2 23 406 427 405 427 0.96
7 36 0.00012 0.0082 17.0 0.9 2 23 436 457 435 457 0.96
8 36 0.00012 0.0082 17.0 0.9 2 23 466 487 465 487 0.96
9 36 0.00012 0.0082 17.0 0.9 2 23 496 517 495 517 0.96
10 36 0.00012 0.0082 17.0 0.9 2 23 526 547 525 547 0.96
11 36 0.00012 0.0082 17.0 0.9 2 23 556 577 555 577 0.96
12 36 0.00012 0.0082 17.0 0.9 2 23 586 607 585 607 0.96
13 36 0.00012 0.0082 17.0 0.9 2 23 616 637 615 637 0.96
14 36 0.00012 0.0082 17.0 0.9 2 23 646 667 645 667 0.96
15 36 0.00012 0.0082 17.0 0.9 2 23 676 697 675 697 0.96
16 36 0.00012 0.0082 17.0 0.9 2 23 706 727 705 727 0.96
17 36 0.00012 0.0082 17.0 0.9 2 23 736 757 735 757 0.96
18 36 0.00012 0.0082 17.0 0.9 2 23 766 787 765 787 0.96
19 36 0.00012 0.0082 17.0 0.9 2 23 796 817 795 817 0.96
20 36 0.00012 0.0082 17.0 0.9 2 23 826 847 825 847 0.96
21 36 0.00012 0.0082 17.0 0.9 2 23 856 877 855 877 0.96
22 36 0.00012 0.0082 17.0 0.9 2 23 886 907 885 907 0.96
23 36 0.00012 0.0082 17.0 0.9 2 23 916 937 915 937 0.96
24 36 0.00012 0.0082 17.0 0.9 2 23 946 967 945 967 0.96
25 36 0.00012 0.0082 17.0 0.9 2 23 976 997 975 997 0.96
26 36 0.00012 0.0082 17.0 0.9 2 23 1006 1027 1005 1027 0.96
27 36 0.00012 0.0082 17.0 0.9 2 23 1036 1057 1035 1057 0.96
28 36 0.00012 0.0082 17.0 0.9 2 23 1066 1087 1065 1087 0.96
29 36 0.00012 0.0082 17.0 0.9 2 23 1096 1117 1095 1117 0.96
30 36 0.00012 0.0082 17.0 0.9 2 23 1126 1147 1125 1147 0.96
31 36 6.9e-07 4.7e-05 24.0 0.7 1 23 1153 1175 1153 1175 0.98
32 36 4.2e-06 0.00029 21.5 0.3 1 23 1181 1203 1181 1203 0.97
33 36 0.016 1.1 10.2 0.5 2 23 1231 1251 1230 1251 0.97
34 36 0.0052 0.36 11.8 8.1 1 23 1257 1280 1257 1280 0.96
35 36 2.3e-05 0.0016 19.2 0.6 1 23 1286 1308 1286 1308 0.97
36 36 9 6.2e+02 1.6 0.1 1 11 1572 1582 1572 1586 0.83

Sequence Information

Coding Sequence
ATGCACATTATTTCGTCCACTAGATACCGAGAAATGTTCGAGAAACTGACTGAGACCAagCTTGCCATAGAAGATGGAAGACCGGAGACAATCTGTCACCTCTGCTGTGCTCAGCTCGAGAAAAGTTGGATGTTCTTCCAAATGGCACAGAATACTGAGAATATTATTACCAGCCGTCTGCTTGAgGTGCAAGAGACGGAACCGGAAGTGACCGTCACAGTCAAAGAGGAAATAGACGACGAAGACGAATGGCAGCTGTTTCAAGATGAGTTCATGGATTCGCCATCTCCTGAGATCGACAATGAACAATTatttcccatacaaaaaaCATCAGATAGACAAGACCCACAAGAGATATTCAACAAGAACCATTTGTCTATGCCCAACGACAATTCATCTATATCCAAGGAAATTTTGTCTATGCCTAACGACCATTCATCTATATCCAAGGAAAGTTTGTCTATGCCTGACGACCATTCATCTATATCCAAGGAAATTTTGTCTATGCCTAACGACCATTCATCTACATCCAAGGAAATTTTGTCTATGCCCAACGACAATTCATCTACATCCATGGAATTTTTGTCTATGCCCAAAGACCAACAAAAATCTTTGCCAGAAGATATAAACTCATCGGAACACATATTTAAGAGTgatataaagataaaaaatgaAGCAATCGAACCAATATTCAATGAGAATATAGAATATAGTTCGGTTATGGATAACATTATTGGACCATTGAAAGCTGATCTCAAATTTCACCCGGCCAAGAACAGAGAGGCATTCTACTATTGTACACAATGTCACTATCGCTGTCAACACTCCAAGACACTCCGCAAGCACAGCCGCGTGCACGACGCATCTCTCTCGTTCCCGTGCCCCCTGTGCCGGTACAGGTTCGCGGACGCGCGCCGCCTCGCCGCGCACCGCAACTACTGCACCGTCTGCAACGTGTGCGGGAAGACCTTCCACAACCTCAATGGACTGAGGATACATGTGCGGCTGCATACAGGTATATACAACTACTGCACCGTCTGCAACGTGTGCGGGAAGACCTTCCACAACCTCAATGGACTGAGGATACATGTGCGGCTGCATACAGGTATATACAACTACTGCACCGTCTGCAACGTGTGCGGGAAGACCTTCCACAACCTCAATGGACTGAGGATACATGTGCGGCTGCATACAGGTATATACAACTACTGCACCGTCTGCAACGTGTGCGGGAAGACCTTCCACAACCTCAATGGACTGAGGATACATGTGCGGCTGCATACAGGTATATACAACTACTGCACCGTCTGCAACGTGTGCGGGAAGACGTTCCACAACCTCAATGGACTGAGGATACATGTGCGGCTGCATACAGGTATATACAACTACTGCACCGTCTGCAACGTGTGCGGGAAGACCTTCCACAACCTCAATGGACTGAGGATACATGTGCGGCTGCATACAGGTATATACAACTACTGCACCGTCTGCAACGTGTGCGGGAAGACCTTCCACAACCTCAATGGACTGAGGATACATGTGCGGCTGCATACAGGTATATACAACTACTGCACCGTCTGCAACGTGTGCGGGAAGACCTTCCACAACCTCAATGGACTGAGGATACATGTGCGGCTGCATACAGGTATATACAACTACTGCACCGTCTGCAACGTGTGCGGGAAGACCTTCCACAACCTCAATGGACTGAGGATACATGTGCGGCTGCATACAGGTATATACAACTACTGCACCGTCTGCAACGTGTGCGGGAAGACCTTCCACAACCTCAATGGACTGAGGATACATGTGCGGCTGCATACAGGTATATACAACTACTGCACCGTCTGCAACGTGTGCGGGAAGACCTTCCACAACCTCAATGGACTGAGGATACATGTGCGGCTGCATACAGGTATATACAACTACTGCACCGTCTGCAACGTGTGCGGGAAGACCTTCCACAACCTCAATGGACTGAGGATACATGTGCGGCTGCATACAGGTATATACAACTACTGCACCGTCTGCAACGTGTGCGGGAAGACCTTCCACAACCTCAATGGACTGAGGATACATGTGCGGCTGCATACAGGTATATACAACTACTGCACCGTCTGCAACGTGTGCGGGAAGACGTTCCACAACCTCAATGGACTGAGGATACATGTGCGGCTGCATACAGGTATATACAACTACTGCACCGTCTGCAACGTGTGCGGGAAGACCTTCCACAACCTCAATGGACTGAGGATACATGTGCGGCTGCATACAGGTATATACAACTACTGCACCGTCTGCAACGTGTGCGGGAAGACCTTCCACAACCTCAATGGACTGAGGATACATGTGCGGCTGCATACAGGTATATACAACTACTGCACCGTCTGCAACGTGTGCGGGAAGACCTTCCACAACCTCAATGGACTGAGGATACATGTGCGGCTGCATACAGGTATATACAACTACTGCACCGTCTGCAACGTGTGCGGGAAGACCTTCCACAACCTCAATGGACTGAGGATACATGTGCGGCTGCATACAGGTATATACAACTACTGCACCGTCTGCAACGTGTGCGGGAAGACCTTCCACAACCTCAATGGACTGAGGATACATGTGCGGCTGCATACAGGTATATACAACTACTGCACCGTCTGCAACGTGTGCGGGAAGACCTTCCACAACCTCAATGGACTGAGGATACATGTGCGGCTGCATACAGGTATATACAACTACTGCACCGTCTGCAACGTGTGCGGGAAGACCTTCCACAACCTCAATGGACTGAGGATACATGTGCGGCTGCATACAGGTATATACAACTACTGCACCGTCTGCAACGTGTGCGGGAAGACGTTCCACAACCTCAATGGACTGAGGATACATGTGCGGCTGCATACAGGTATATACAACTACTGCACCGTCTGCAACGTGTGCGGGAAGACCTTCCACAACCTCAATGGACTGAGGATACATGTGCGGCTGCATACAGGTATATACAACTACTGCACCGTCTGCAACGTGTGCGGGAAGACCTTCCACAACCTCAATGGACTGAGGATACATGTGCGGCTGCATACAGGTATATACAACTACTGCACCGTCTGCAACGTGTGCGGGAAGACCTTCCACAACCTCAATGGACTGAGGATACATGTGCGGCTGCATACAGGTATATACAACTACTGCACCGTCTGCAACGTGTGCGGGAAGACCTTCCACAACCTCAATGGACTGAGGATACATGTGCGGCTGCATACAGGTATATACAACTACTGCACCGTCTGCAACGTGTGCGGGAAGACCTTCCACAACCTCAATGGACTGAGGATACATGTGCGGCTGCATACAGGTATATACAACTACTGCACCGTCTGCAACGTGTGCGGGAAGACCTTCCACAACCTCAATGGACTGAGGATACATGTGCGGCTGCATACAGGGGAACAACCTTATTCATGCGACCTCTGCGGCCGAGGATTCAACCAGAAAACGAATTTACAGACACACTTGAGAGTTCACGCACGAGAAAAACAATACCCCTGCGAAATATGTAACAAAATCTTCCCATTCAACTCCTATCTGAAACGACATATATTACTGCACAACGAAAACCAAGATAGCGACAGCTTGCATCGCAGCGTGAACTGTCACAAGCTATTTAACCGTAAGAAAAAGGCCATGTCTACTTGTACGGTCTGCGGGAAGATTCTACGTAAAGATAGCATGTTAATGCATATGAGGTTGCATACTGGCCAACAACCTTTTTCCTGCGAAAAATGTCATCGATGTTTCAACCAGAAGTGTAATCTGCTGACTCATGTTGAAAGGGTACATCCGGGAGATGAAATGTTTGCGTGTAAAGTTTGTTATAAAACTTTCGCGATGAATTCTGAGTTACGAAAGCATATAGGAACGCATGGTATGGACGTTGAAGTTAAAGATGAGCTGCTCAAGCAGACAGAGAAGACGTTAGAGAATATTATAAGCCGGTATGAGAAAGAGATGGAGCAGAGAATGGAGAAGAAAGAACTTACTGAAATGGAAAAGAAAATGGAGCTCATTTTGAATCTGGGATTGAAACCTAGAGTTACTAAACCGGTCCAAAATGGTGTAACAAACTTAGGTTTATTTGCTGAAGATAAAATACAAGATTCAGAAGATTTGGATAAAAACAAATCAGAAGCTATCTCAAACAAAGAAGAGATAAGCGAAAGTAATAAAGAATTCGAAGATATCGAACACTTCGATGACAGCATAGAAGTTCTTGAGCTAGAACTATCAGATACAGAATACCAAAACACTAGAGAAAATGAAGAATTCACTTCCAACGAGGATTTAGAAGTATCCTCGATAAATCATCAAGAAGATTTAACCAAAGGATTTATAGCAGTAACATCCGACGAAGAAGAGATAGATGAAATCCCAGACTTTAAAATACCTGAAACTAAACAAAGAGATTACACCGGTGTAGAAATATCAGTTATTGACCCTGATGATGTGGATGAAGAAGAATATGAAGAAGAATATCTCGATTCCTCCGAGGATgatagtataataattaatgattctGATGATGATACTGAACTCGATTCAAATACAGGGACTGAAAATAATCTAGAATTAGAAATTAGTGACAGTGAAAGTGTTAAAAATGAGGATTCACTTCACAGGCAACTAAACAATGTTATTAGAATGCCAGTGCAAGGGTATCCTTGTGATATGTGTGGAATTGTAACTAAGGTATTGTCTTACTAA
Protein Sequence
MHIISSTRYREMFEKLTETKLAIEDGRPETICHLCCAQLEKSWMFFQMAQNTENIITSRLLEVQETEPEVTVTVKEEIDDEDEWQLFQDEFMDSPSPEIDNEQLFPIQKTSDRQDPQEIFNKNHLSMPNDNSSISKEILSMPNDHSSISKESLSMPDDHSSISKEILSMPNDHSSTSKEILSMPNDNSSTSMEFLSMPKDQQKSLPEDINSSEHIFKSDIKIKNEAIEPIFNENIEYSSVMDNIIGPLKADLKFHPAKNREAFYYCTQCHYRCQHSKTLRKHSRVHDASLSFPCPLCRYRFADARRLAAHRNYCTVCNVCGKTFHNLNGLRIHVRLHTGIYNYCTVCNVCGKTFHNLNGLRIHVRLHTGIYNYCTVCNVCGKTFHNLNGLRIHVRLHTGIYNYCTVCNVCGKTFHNLNGLRIHVRLHTGIYNYCTVCNVCGKTFHNLNGLRIHVRLHTGIYNYCTVCNVCGKTFHNLNGLRIHVRLHTGIYNYCTVCNVCGKTFHNLNGLRIHVRLHTGIYNYCTVCNVCGKTFHNLNGLRIHVRLHTGIYNYCTVCNVCGKTFHNLNGLRIHVRLHTGIYNYCTVCNVCGKTFHNLNGLRIHVRLHTGIYNYCTVCNVCGKTFHNLNGLRIHVRLHTGIYNYCTVCNVCGKTFHNLNGLRIHVRLHTGIYNYCTVCNVCGKTFHNLNGLRIHVRLHTGIYNYCTVCNVCGKTFHNLNGLRIHVRLHTGIYNYCTVCNVCGKTFHNLNGLRIHVRLHTGIYNYCTVCNVCGKTFHNLNGLRIHVRLHTGIYNYCTVCNVCGKTFHNLNGLRIHVRLHTGIYNYCTVCNVCGKTFHNLNGLRIHVRLHTGIYNYCTVCNVCGKTFHNLNGLRIHVRLHTGIYNYCTVCNVCGKTFHNLNGLRIHVRLHTGIYNYCTVCNVCGKTFHNLNGLRIHVRLHTGIYNYCTVCNVCGKTFHNLNGLRIHVRLHTGIYNYCTVCNVCGKTFHNLNGLRIHVRLHTGIYNYCTVCNVCGKTFHNLNGLRIHVRLHTGIYNYCTVCNVCGKTFHNLNGLRIHVRLHTGIYNYCTVCNVCGKTFHNLNGLRIHVRLHTGIYNYCTVCNVCGKTFHNLNGLRIHVRLHTGIYNYCTVCNVCGKTFHNLNGLRIHVRLHTGEQPYSCDLCGRGFNQKTNLQTHLRVHAREKQYPCEICNKIFPFNSYLKRHILLHNENQDSDSLHRSVNCHKLFNRKKKAMSTCTVCGKILRKDSMLMHMRLHTGQQPFSCEKCHRCFNQKCNLLTHVERVHPGDEMFACKVCYKTFAMNSELRKHIGTHGMDVEVKDELLKQTEKTLENIISRYEKEMEQRMEKKELTEMEKKMELILNLGLKPRVTKPVQNGVTNLGLFAEDKIQDSEDLDKNKSEAISNKEEISESNKEFEDIEHFDDSIEVLELELSDTEYQNTRENEEFTSNEDLEVSSINHQEDLTKGFIAVTSDEEEIDEIPDFKIPETKQRDYTGVEISVIDPDDVDEEEYEEEYLDSSEDDSIIINDSDDDTELDSNTGTENNLELEISDSESVKNEDSLHRQLNNVIRMPVQGYPCDMCGIVTKVLSY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-