Cv-a008697.1
Basic Information
- Insect
- Chloroclystis v-ata
- Gene Symbol
- -
- Assembly
- GCA_963691955.1
- Location
- OY829900.1:18060632-18070517[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3e-11 5.3e-08 32.9 0.0 4 39 209 245 206 249 0.90 2 4 3.4e-14 5.8e-11 42.3 0.1 1 39 260 298 260 301 0.95 3 4 4.2e-17 7.3e-14 51.6 0.1 2 45 316 360 315 360 0.96 4 4 3.7e-18 6.3e-15 55.0 0.0 1 44 367 411 367 412 0.96
Sequence Information
- Coding Sequence
- ATGGCTCACCCTGGAGCTGCTTCCGTCAAATGTGAACCATCTTCTGATGAAGAGGACAACCCTCATGTACCTGATCTCTTCCTGAGTAACACGttggGTCCTCTGGCCCCGGCCGGGCCCGCGGCGACCCCGGTCTGCGTGAAGGCGGAGCCCGACCAGTACCCCGCGCACACCCTGGAGACGCTGGAGTCCACGCCGCATGCCACGGAAATGGCTCACCCTGGAGCTGCTTCCGTCAAATGTGAACCATCTTCTGATGAAGAGGACAACCCTCATGTACCTGATCTCTTCCTGAGTAACACGttggGTCCTCTGGCCCCGGCCGGGCCCGCGGCGACCCCGGTCTGCGTGAAGGCGGAGCCCGACCAGTACCCCGCGCACACCCTGGAGACGCTGGAGTCCACGCCGCATGCCACGGGATGTCTGCGGGAGCGTCATATGGCCATTTTGCGGTCGTCTGATGATTCCGATTCGACTAACTTCATGCCACTGCAAGTTATCAAGGATGAACCACTTTCTGAAGATTGTCAGACGTTGGAGCACACAAGCGGAGACGAGCTGAGTGACTCGAGCGGTCTGCCGGAGCCcgaggcgcgcggcggcccCAAGACCTGGCGCCAGCAGGACATGGACAGCGCGCTGGATGCCTTGAGGAACCATAACATGAGTCTCACGAAGGCCTCTGCAACATACGGCATCCCGTCGACGACGCTGTGGCAGCGCGCCCACCGCCTCGGCATCGACACCCCGAAGAAGGAAGGCTCGCCCAAGGCCTGGACTGAAGACGATCTGCGGGCGGCCCTGCAGGCGCTCCGGGAGGGCGCGATATCGGCCAATAAGGCCAGCAAGGCTTATGGTATACCAAGCAGCACACTGTACAAGATAGCGCGCCGCGAAGGCATCCGCCTGGCCGCGCCGTTCAACGCCGCGCCGGTGTCGTGGCGGCGCGGCgacctgcagcgcgcgctccaCGCCATCCGCTCCGGCCGCGCGTCCGTGCAGCGAGCCGCGTCGCAGTACGGGATACCCACAGGCACTCTCTATGGTCGTTGCAAGCGAGAAGGCATCGAGCTCTCCCGATCCAACCCCACGCCCTGGTCCGAGGATGCCATGGGGGAAGCATTAGAAGCCGTCAGAATTGGTCAGATGTCCATTAACCAAGCAGCTATCCACTACAACCTGCCGTATTCTTCGCTCTACGGAAGGTTCAAGCGCTGCAAATATCCGGCACAGCCTGCGCCACAAGACGCTCAGAACCCTCCAGAAGTGAGCAACACTCAAGACATCAACTACTACATGCCGATGTACCACGAACAAGAGGTGCAGCCGTGTCCGGAGTTTGCTCATGATAGCGCCATTGCCCTGGAGCCGTTCTGCGGACAGGCGATGTACCACAGCCAGAGTTTCAACAGCATAGCAACCAGCTGA
- Protein Sequence
- MAHPGAASVKCEPSSDEEDNPHVPDLFLSNTLGPLAPAGPAATPVCVKAEPDQYPAHTLETLESTPHATEMAHPGAASVKCEPSSDEEDNPHVPDLFLSNTLGPLAPAGPAATPVCVKAEPDQYPAHTLETLESTPHATGCLRERHMAILRSSDDSDSTNFMPLQVIKDEPLSEDCQTLEHTSGDELSDSSGLPEPEARGGPKTWRQQDMDSALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGSPKAWTEDDLRAALQALREGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPVSWRRGDLQRALHAIRSGRASVQRAASQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRIGQMSINQAAIHYNLPYSSLYGRFKRCKYPAQPAPQDAQNPPEVSNTQDINYYMPMYHEQEVQPCPEFAHDSAIALEPFCGQAMYHSQSFNSIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -