Basic Information

Insect: Chironomus tentans
Gene Symbol: -
Assembly: GCA_963573255.1
Location: OY754303.1:4818723-4824679[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 7.9 4.2e+02 1.9 0.3 1 13 119 131 119 136 0.79

2 19 0.049 2.6 8.9 0.2 2 23 351 373 350 373 0.91

3 19 0.00042 0.022 15.4 1.5 1 20 387 406 387 408 0.94

4 19 0.047 2.5 8.9 0.4 2 23 445 467 444 467 0.92

5 19 0.2 11 7.0 1.7 1 23 737 760 737 760 0.94

6 19 6.6 3.5e+02 2.2 0.8 2 23 783 804 782 804 0.77

7 19 0.0012 0.066 13.9 0.1 2 23 811 833 810 833 0.95

8 19 0.33 18 6.3 0.8 1 23 838 861 838 861 0.96

9 19 2.2 1.2e+02 3.7 2.1 2 23 875 895 874 895 0.85

10 19 1.5 78 4.2 2.3 1 21 912 932 912 933 0.94

11 19 0.43 23 5.9 1.0 1 23 958 981 958 981 0.97

12 19 0.089 4.7 8.1 0.2 1 23 1197 1220 1197 1220 0.98

13 19 0.0033 0.17 12.6 0.2 2 23 1245 1266 1244 1266 0.95

14 19 2.3 1.2e+02 3.6 0.2 2 10 1274 1282 1273 1284 0.89

15 19 0.026 1.4 9.7 0.2 2 23 1395 1416 1394 1416 0.93

16 19 6.1e-05 0.0032 18.0 0.5 3 23 1424 1445 1423 1445 0.96

17 19 0.31 17 6.3 0.4 1 23 1455 1478 1455 1478 0.95

18 19 0.24 13 6.7 0.7 1 23 1569 1592 1569 1592 0.92

19 19 0.079 4.2 8.2 2.5 2 23 1597 1619 1596 1619 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	7.9	4.2e+02	1.9	0.3	1	13	119	131	119	136	0.79
2	19	0.049	2.6	8.9	0.2	2	23	351	373	350	373	0.91
3	19	0.00042	0.022	15.4	1.5	1	20	387	406	387	408	0.94
4	19	0.047	2.5	8.9	0.4	2	23	445	467	444	467	0.92
5	19	0.2	11	7.0	1.7	1	23	737	760	737	760	0.94
6	19	6.6	3.5e+02	2.2	0.8	2	23	783	804	782	804	0.77
7	19	0.0012	0.066	13.9	0.1	2	23	811	833	810	833	0.95
8	19	0.33	18	6.3	0.8	1	23	838	861	838	861	0.96
9	19	2.2	1.2e+02	3.7	2.1	2	23	875	895	874	895	0.85
10	19	1.5	78	4.2	2.3	1	21	912	932	912	933	0.94
11	19	0.43	23	5.9	1.0	1	23	958	981	958	981	0.97
12	19	0.089	4.7	8.1	0.2	1	23	1197	1220	1197	1220	0.98
13	19	0.0033	0.17	12.6	0.2	2	23	1245	1266	1244	1266	0.95
14	19	2.3	1.2e+02	3.6	0.2	2	10	1274	1282	1273	1284	0.89
15	19	0.026	1.4	9.7	0.2	2	23	1395	1416	1394	1416	0.93
16	19	6.1e-05	0.0032	18.0	0.5	3	23	1424	1445	1423	1445	0.96
17	19	0.31	17	6.3	0.4	1	23	1455	1478	1455	1478	0.95
18	19	0.24	13	6.7	0.7	1	23	1569	1592	1569	1592	0.92
19	19	0.079	4.2	8.2	2.5	2	23	1597	1619	1596	1619	0.94

Sequence Information

Coding Sequence: aTGGCAAAGTGTGTAGTTCCGAGCTGCAGAAGCAATAATAGAGAGTTATTCTGTTCGCcagatgataaaaataagttgCGGAAGTGgaaacaaataattaaaactgaaGAAAACAGTTTTTTAGTTTGTGATATACATTTTGCTGATAAATTCGTGAAATTTGAGAAGTTTATTACTCAAGATGCATTTCCATCAATATTAGTGGAGCCTAATGAGTACAGTAATAATCAAAACAATGATTATTGTCAGAGTTGCTTGAAAGAATTCGAAGCGAGCAGCATAAAAGTTCCAGTGAGTGAAAAGATCcagaagatatttttaaagcgAACAAAATTTGAGATCAAGTTGCATTCCTTCCTTTGTGACATTTGTCATGAGAAGTTTATGGATTTTGAGACATTTATTAGTGCAATAAGAGCTAAACATGAGCTAAAAACGTCATCAGAGAATGTGAGAATCAAAAGTGAGCGAGTAGACGTCGAGGATGATGAGTGTCCAGAGTTGTATCCAATTCAAAATCTAGAGATTACACACCATGATAATGATGATCCAGAGATATTAAGAGAAGTCCTTGGACGTCATGAAATTGTTACACAGCCACGAAGCAGCAGTAATACTCAATCACATACACCAAAGCTTCATACTTTGCAAATTGTGCCTGGCAGACGTTCATCATTGTTAATTCCAAAACTTCAGGAACATCCATTAAAGGACGATGAAGCTGATCAAAGTAATAGTAGCAACAGTAGCAGCAGTAACAATTTGCAGCAAACAGAAAGTACAAATTCGCCAATGATAGTCATTCCAGATTTCCGTAGACGTATTCCAGTCACTGAATCGTTAGCTCGTAAGGTCAGGTCCAAAAGTATTCATATGAAGCAACGAATGATACCATCTGATTTAAATTCCTCAATTCAGCATGATCATGCCTTTACGACTAATGCAGAGAATGTGAATATGAAACGACGCAATTCTGTTGCTAGCATTGCTGATGCCGAGGAATCATCCAGCAAACGCTTTCGTACTCAATTTCCAGAAGCTCGAACGATTCCATGCAACTTTTGTCACATGCAATTTTCAAGTGTCGCAGCATTAAAGCTACATTTAGATGAGGTCCATAAAACGTCACCATTAAAATCTATTGATAAGCCAGAAAATTTCCGCTGTACAGACTGTAATGAAGGATTCACATCGTATTATTACTTGAGGAAGCATAAAGATACTTGCGAATACTCGTTACGTTTTAAATGCTCACAACAATACTGTCGTTTTCGTGCTGCAACAGTTGCCGAGATCAACAATCATATGATTGAAGCTCATTTCAGTCAAACCAAATGCAAAATATGTAAGGTAGACTTTGAAACTCAAGAGCTTTACAAAATCCATGAACTTCAGGAACATAGCAAGAAGGATGGTCGAGGACGAAAATCAAAACATGAAGTTAAAACTGAAGATGATTTGAGGAATATTCTCTTGCATAGAGAATCAACTGAGGGTGACACAAAAGTTCAATGCCTGCAATGCTCTGAGCTTATTTCGCCAGAAATGCTATCGTCTCACATTAAGCAACATTTAAAGgaaaTAAGAAGCTGtcaaagtgaaaataataagcTATTCAGATGTCCACAGGTCAGAAATCAGTCAAAGAAATGGAAGAGCATATTAGGAGTGTCGGAAAAAGAGTTTTATGTCTGTGAATTGCATTTTGATGCTCATTTTATTAGTTACGAGAAAGTTTTGAGCGATGAGGCAGTTCCAACTCTATTTATCAATGACAAACTTCTGGTCAATCAATATTGTGCATGCTGTTCGAATCCAGTTAGTCAGGGACATCAGATTGGCCAGCTACATCTAGAAATACACAGGATGTTGTTCAGCAATTCTGATCTGAATGGAGAGTTCCTTTGCTCAAATTGTAATGTCAAGATGATAGAAGTCAGTGATTTCATTAAGAATGTAGAGGATAGTAGGAGAAATTTCGAATCTCTGGATTTTGAATTGAAGGAACTGGTTGTAAAGATAGAGcctttagaatttcaaatgcTAATTCAAGAGGACACAAAGGAAGTGGAAGAGAAACTCTTTATTAAATCAGAACATAATAGTAATGCTTCAGAAGAAGATAATTATCAATCAGAGCAAGAAGAACCACCGCCTAAACGAATTAAACCTTCAAAAGTGTCTACAAAAGGAACTAAGAGCTCagaatttaaatgtgaaatttgctCGTCTGCCTTTGATACCAAAAACGATATAAGTCATCATGTTTTCAGCACGCACGCTTGCGATGAGGAAATTATGGGATGTAAAGAGAACAGCAATACTCCGTATCACAAATGTGTTGTTAAATGTCCAGAATGTGAAAGGAAAGTTAAGTACTATACTTACAGGAGTCACTTCTCATCAGTACATTCGGGCTTACGTGACTTGATGTGTGATCAATGTGGTAAAGGATTTGCAATTATATCGTCGCTAACAAATCACATCAAATTAACTCACAATAGAACAACTTATGTATGTGATATCTGTGGATATAAAAGCTGGAAcaagtataaaataaaaatgcatctCAATCGGAACCACAATCCCGTGTACATTAAAAAGAGCAAAGCTGAAGCTATAAAATGTCCAATTTGCTTTAAAATCTGTTCATCGTCTCTAAATCAACACAAGGAAAAGTGGCATCCGAATAATTACGACAGTGGAGCTCGTGTAAATCCTGAAACTAACAAATATCATTGTCCAAAGTGTATTCAGACCTTCGCAAGTATACACCACTTTGACAGACATGTCAAAGAAAATATCTGCTCGAATTTTGAAAAGTATGAAGTTGAAGACGGTAAAAAACTGACCACACTGACACCGGGAAAATTTACGTGCAACATCTGCAAATCTGTGAAGCCAACGCTAGTAAAACTAAGGAGACACATAACGACATTCCATTCTGTTATAGAAATGTCAAGTGTCAAAAGATGTGCTGTAAAAAGCTGTACGAACGATAATCACAAGCTCTTTCGATGTCCAGAATCCAGGAGTCAActgaagaaatggaaaaatgtcCTAGAAATTTCAGAAAAGGAGTTTTATGTCTGTGAATTGCATTTTGATGcccattttattaattatgagAAAGTATTGAGTGATGAAGCAGTTCCAACACTttttatcaatgaaaatttaaagaatattaGCTGTGCTAGTTGCTTGAGTCCAATTAGTGAAGGACATCAAGTTAGTTCCTCACATCGAGGAATTTTCAGGATGTTATTCAATAATTATGAaCTTCTTTCAAGCTACATATGTGCTTACTGCAATGACCAACTCATCAGAATCAATGACTTTATCAAAATAGTCGAAGAAAACAGAAGAAATTTTGAGTCTCTGGATATTGATATAAAGGAACAAGTTATAAAACTAGAACCTGAAGAATACGATTTAGTTACCCGTGATGTCCTTTTTGTGAAAACTGAAGAAGATCAGAATGAGTCAGAGCAGGAAATCTACTTCCATGAAATAGCCGagaagtcaaaaaataaaggaactaAGAGGAAATCCAGTCCACCTGCCGTAATCAAGAACCAGAAAAGCTACAAATGTGAAGTTTGCTTCATCACAGTTTAtggcaaaaatgaatttatagaACATATAAAAAGTATCCATTCCGTAGCTGATGACATAGAATGTGATATAAATGAGAATCCAGATCCACTAAATGGAACTACACAGTCAATCGAATGTGATATCTGCCGTGAAATGTTCAgcgataaaaaattacttgTTGATCACTTTAAGGCACATTTTAATAAGAATAAGGCATTAAAATGTTCAGAATGCAATAAAAGCTATAACGGAATCAATGTCCTAGCATTCCATAAGAACTGTGAGCATAAGGATGGAAATagattttattgtatttgcTACAGAATATTTGATAATGAATTTGACATGCGACAGTGTAGGAAGAACCACAAAATGACAATAAGTAGTAATGAACATGTTTGCAATGAATGTGACTCATACATAGCATTCGAAAATGTCCGGAAACTAGCTTGTCATAAAACAAAAGTTCATGGAAAAGGCAAAAGGTATTGGTGTATTGGATGtggaaaattacatttatcaAAGGAAGCAAATCTAAAATGCAGGAAGAGTCATTACAGTCCATTAAAAAGCGTCGTCGTTAGATGCCCAGACTGTGATAAGAAAATCACTTATGATTCCTTAAAAACTCATCAATTAGCAGTGCATTCAGGcattaagaatgaaatttgtgaTCAGTGTGGAAAagcatttccattaaaatccCAGCTGTCTAgtcatatgaaaaattttcatggaaataaGGACGAAAAGGAAGTCATCTATGAATGTGATCTATGtccatcaaaatataaatctaAAGGTGGCATTTTTACGCATGTCAATCAGAATCATAATCCTGAAAAGAAGATGATTCAATGTCCTATATGTCTTAAAAAgatgtttaatttattagatGCACACATGAAGAATGTCCATCCTAATAATATCGATAATGGTGTTCGAGTGAATCCAGTCAGTAACAAATATCACTGTCCAAACTGCATAAGAAAATTCGGTGGAATGAGACAGTATGAGGTTCATGTTAGGGATAATATCTGCTCAAATTTCGGAAAGTATGAAGTGGACGAGACTAAGAAGCTGACTGTATTTACACAGGGGAAGTTTACTTGTAacatttgcaataaaattaaatcctcgATGATAAAGCTGAGAATCCACATGAGCGACTATCACTCAGCACCACAAAAATGTCCAGTATGCAGCAAAATACTCAAGAATCGAAGACAAATGCACAAGCATGTCTATAAAGTACACAAAACATCCATGAAACAGATCAAAAGCTCTTATGGGACATAA
Protein Sequence: MAKCVVPSCRSNNRELFCSPDDKNKLRKWKQIIKTEENSFLVCDIHFADKFVKFEKFITQDAFPSILVEPNEYSNNQNNDYCQSCLKEFEASSIKVPVSEKIQKIFLKRTKFEIKLHSFLCDICHEKFMDFETFISAIRAKHELKTSSENVRIKSERVDVEDDECPELYPIQNLEITHHDNDDPEILREVLGRHEIVTQPRSSSNTQSHTPKLHTLQIVPGRRSSLLIPKLQEHPLKDDEADQSNSSNSSSSNNLQQTESTNSPMIVIPDFRRRIPVTESLARKVRSKSIHMKQRMIPSDLNSSIQHDHAFTTNAENVNMKRRNSVASIADAEESSSKRFRTQFPEARTIPCNFCHMQFSSVAALKLHLDEVHKTSPLKSIDKPENFRCTDCNEGFTSYYYLRKHKDTCEYSLRFKCSQQYCRFRAATVAEINNHMIEAHFSQTKCKICKVDFETQELYKIHELQEHSKKDGRGRKSKHEVKTEDDLRNILLHRESTEGDTKVQCLQCSELISPEMLSSHIKQHLKEIRSCQSENNKLFRCPQVRNQSKKWKSILGVSEKEFYVCELHFDAHFISYEKVLSDEAVPTLFINDKLLVNQYCACCSNPVSQGHQIGQLHLEIHRMLFSNSDLNGEFLCSNCNVKMIEVSDFIKNVEDSRRNFESLDFELKELVVKIEPLEFQMLIQEDTKEVEEKLFIKSEHNSNASEEDNYQSEQEEPPPKRIKPSKVSTKGTKSSEFKCEICSSAFDTKNDISHHVFSTHACDEEIMGCKENSNTPYHKCVVKCPECERKVKYYTYRSHFSSVHSGLRDLMCDQCGKGFAIISSLTNHIKLTHNRTTYVCDICGYKSWNKYKIKMHLNRNHNPVYIKKSKAEAIKCPICFKICSSSLNQHKEKWHPNNYDSGARVNPETNKYHCPKCIQTFASIHHFDRHVKENICSNFEKYEVEDGKKLTTLTPGKFTCNICKSVKPTLVKLRRHITTFHSVIEMSSVKRCAVKSCTNDNHKLFRCPESRSQLKKWKNVLEISEKEFYVCELHFDAHFINYEKVLSDEAVPTLFINENLKNISCASCLSPISEGHQVSSSHRGIFRMLFNNYELLSSYICAYCNDQLIRINDFIKIVEENRRNFESLDIDIKEQVIKLEPEEYDLVTRDVLFVKTEEDQNESEQEIYFHEIAEKSKNKGTKRKSSPPAVIKNQKSYKCEVCFITVYGKNEFIEHIKSIHSVADDIECDINENPDPLNGTTQSIECDICREMFSDKKLLVDHFKAHFNKNKALKCSECNKSYNGINVLAFHKNCEHKDGNRFYCICYRIFDNEFDMRQCRKNHKMTISSNEHVCNECDSYIAFENVRKLACHKTKVHGKGKRYWCIGCGKLHLSKEANLKCRKSHYSPLKSVVVRCPDCDKKITYDSLKTHQLAVHSGIKNEICDQCGKAFPLKSQLSSHMKNFHGNKDEKEVIYECDLCPSKYKSKGGIFTHVNQNHNPEKKMIQCPICLKKMFNLLDAHMKNVHPNNIDNGVRVNPVSNKYHCPNCIRKFGGMRQYEVHVRDNICSNFGKYEVDETKKLTVFTQGKFTCNICNKIKSSMIKLRIHMSDYHSAPQKCPVCSKILKNRRQMHKHVYKVHKTSMKQIKSSYGT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -