Cten007487.1
Basic Information
- Insect
- Chironomus tentans
- Gene Symbol
- -
- Assembly
- GCA_963573255.1
- Location
- OY754303.1:22565546-22568115[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 2.4 1.3e+02 3.5 0.0 2 16 5 19 5 21 0.82 2 12 2.9 1.5e+02 3.3 1.2 3 23 221 242 221 242 0.94 3 12 0.85 45 5.0 2.0 1 23 280 303 280 303 0.93 4 12 0.029 1.5 9.6 2.8 1 23 312 335 312 335 0.94 5 12 0.0048 0.26 12.0 1.1 1 23 406 429 406 429 0.95 6 12 8.4 4.4e+02 1.8 3.6 1 23 496 518 496 518 0.92 7 12 6e-08 3.2e-06 27.5 1.5 1 23 531 553 531 553 0.98 8 12 4e-05 0.0021 18.6 0.1 2 23 562 583 561 583 0.95 9 12 9e-05 0.0047 17.5 2.7 1 23 589 611 589 611 0.95 10 12 0.00022 0.012 16.3 0.2 3 23 619 639 617 639 0.98 11 12 8.8e-05 0.0047 17.5 0.7 1 23 645 667 645 667 0.98 12 12 7e-06 0.00037 21.0 2.2 1 23 673 696 673 696 0.96
Sequence Information
- Coding Sequence
- ATGGAGAAAGAGCAGTGTAGAATGTGTGGGAAAACACTAGAAATGTCTGATTTGCTGGAAATCACTCAAGAATTGCAAAATATGATTGAATATCATTGTAGAATAAGtattaatttaacaaatgTACGATATCCGAACAAATTGTGCTTTGATTGCAACTATACAATAGAGAATTTTGCTAGATTCACAGAGGATGCTAGAAACACACAGTTAAAATTCTCAGCACTCCTTAATGACatcaaaatagaaattgaagaCCTTCCAGCGTTGATAGAAGAGACTAAGATATTGGATCTATTTATTGATGAGCCTAAAGTTGAGATTGACGAGGATATACACGAATTAGataaaccaaaatcaagtaaaaggagaaaaaaagtcatagaaattgaagaaactgTTCCAAAAAGCAATGAAGGAAGTGGTTCCGATGATTCGTGTTCTGACAGTGACTATGAAGAAAATAAGTATTACAAGAGAAAAAAGCCAGTAAAGCATCGGCGAGTTAGAATGAAGAGAAAGAAATCAAGTAGCATTGGTGATGacgagaatgaaattttacaggAAGTGCCACAAAGTGATAGAAATAAGAATGgaacaataaagaaaaaatctctAGCTACATATGAAGGAAAGACATGGAATGATTTAAACATTGGTTGTGTTGAATGCGATCAATTTGCTAAAGGACCTTTTGAATTAAGGCAGCATCATTTCAAATATCATTCCTTAGACTCTCAGTTCAGATGTTTCGAATGTGCTCATCAGAATGATGTCAATTTTAGCTACTTCTATCAATTTCTAAATCATTATCCAGAGCATCAAAAACACATGAAATTCTGTTGTgTAATTTGTTCTGAAATGTTTTGGAACACAAGAAGCCTCAATCAGCATTATGAAAACAGCCATGACAAATCAGATCGAACAGCGTTATTTCATTGTATGAGATGTGGACAGTATTTTAGGAAatcatttgatttaattaatcacGAATCTCGAGTGCATAACATAGAATCATCGCAGCCTGTCGAAATTGATTCCACAAAAGTAGCATCACTCACAATGGAAGATATATTTGAGGAGGAAATGAAATGTGATTCATTTGAGCAAAAAAgtccatttaatttattagaagATGAGAAGAATTCAGATGGGACTGTTACAATTGAATGTAAGGAGAAGTTTAGCGAACGTATGTGGAATAATATTGCAATCTATCAATGTACTCACTGCGGTATTCAATCATCGACTATCTATCAGCTTTATGAGCACTATAATGCTGAACATtcagacacaaaaaatagttttgtgtGTAAAAGTTGTCCTGAACATAAAACTTTCCTTAACTTAGAATCATTCGTTAATCATACATTTACAATACATCATGAGCACTTGAGATATTTCTGCTTTATTTGCTTTAATGGATATTGGAATTATAAGACGTTATATCATCATTATAAAACAGAACATGAGGATTATAAAGCATTTATATGTTTATATTGTGGAAAGTATCATAAATCAGTATATGATATAAGACATCATAAGGAAGTGCATTCAACAAAAGGGGATAAATTGAAGCAATCGAGGAACTTCACTTGCTCAATTTGTCCCAAATCATTTACAAGACAGAATCAATTACAGCGTCATCTTGATACACATGTCAAGAATGAGAATAAAGTTTGGATTTGTGAAAATTGCGGAAAGAGTTTCAATGCGAAATCCACATTAATTAATCATGCAATGGTGCATCAGACTGAGAAACCATTTGTTTGTACAACGTGCGGCGAAGGATTTAAAAACAAGTATAAATTGAAGCATCACAAAGGAATTCACACAGGCGAGCGTAATTTTGGGTGTGAGATTTGCGGGCAAAGGTTTAGAGCGAAAGGAACGTTAAAAGGTCATATGCTGTCACATAGCGGCGAACGTCCCTTTAgttgtgaattttgtgacaagcGGTTCGCAGCAAAATATGATTTACTCGTCCATACTAGGCTGCATACTGGAGAATTTACTCACGAATGTCCGATTTGTCACGAACGATACCCTAGTTGGAGTAACTATTCAAAACATATGCGTGGACGTCATCAAATCGATCCAAGAtctgagaagaagaaaaagtatgatgcaattatcaaaaattatcagGAGAGAAGTAATGAAGCACAGCCAGAAATGAACGATTCCTCGCAATTTTATCCCATGTAA
- Protein Sequence
- MEKEQCRMCGKTLEMSDLLEITQELQNMIEYHCRISINLTNVRYPNKLCFDCNYTIENFARFTEDARNTQLKFSALLNDIKIEIEDLPALIEETKILDLFIDEPKVEIDEDIHELDKPKSSKRRKKVIEIEETVPKSNEGSGSDDSCSDSDYEENKYYKRKKPVKHRRVRMKRKKSSSIGDDENEILQEVPQSDRNKNGTIKKKSLATYEGKTWNDLNIGCVECDQFAKGPFELRQHHFKYHSLDSQFRCFECAHQNDVNFSYFYQFLNHYPEHQKHMKFCCVICSEMFWNTRSLNQHYENSHDKSDRTALFHCMRCGQYFRKSFDLINHESRVHNIESSQPVEIDSTKVASLTMEDIFEEEMKCDSFEQKSPFNLLEDEKNSDGTVTIECKEKFSERMWNNIAIYQCTHCGIQSSTIYQLYEHYNAEHSDTKNSFVCKSCPEHKTFLNLESFVNHTFTIHHEHLRYFCFICFNGYWNYKTLYHHYKTEHEDYKAFICLYCGKYHKSVYDIRHHKEVHSTKGDKLKQSRNFTCSICPKSFTRQNQLQRHLDTHVKNENKVWICENCGKSFNAKSTLINHAMVHQTEKPFVCTTCGEGFKNKYKLKHHKGIHTGERNFGCEICGQRFRAKGTLKGHMLSHSGERPFSCEFCDKRFAAKYDLLVHTRLHTGEFTHECPICHERYPSWSNYSKHMRGRHQIDPRSEKKKKYDAIIKNYQERSNEAQPEMNDSSQFYPM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00320026;
- 90% Identity
- -
- 80% Identity
- -