Cten005931.1
Basic Information
- Insect
- Chironomus tentans
- Gene Symbol
- -
- Assembly
- GCA_963573255.1
- Location
- OY754303.1:6411488-6413770[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.019 1 10.2 1.2 3 23 182 203 182 203 0.94 2 13 0.32 17 6.3 0.8 3 23 212 233 210 233 0.87 3 13 0.013 0.7 10.7 0.9 1 23 256 279 256 279 0.92 4 13 1.5 78 4.2 0.1 2 23 289 311 288 311 0.94 5 13 0.00033 0.018 15.7 2.9 1 23 318 341 318 341 0.95 6 13 0.0013 0.069 13.8 0.6 3 23 348 368 347 368 0.95 7 13 0.0023 0.12 13.1 2.7 1 23 442 464 442 464 0.97 8 13 8.6e-05 0.0046 17.5 0.8 3 23 503 524 501 524 0.92 9 13 7.5e-06 0.0004 20.9 1.6 1 23 531 553 531 553 0.98 10 13 0.0037 0.19 12.4 0.4 1 23 559 583 559 583 0.90 11 13 0.00044 0.023 15.3 2.3 1 23 592 616 592 616 0.97 12 13 3.1e-05 0.0017 18.9 1.9 1 23 622 646 622 646 0.96 13 13 0.0061 0.32 11.7 0.8 1 23 653 677 653 677 0.92
Sequence Information
- Coding Sequence
- ATGGAAGGGTGTAGACTGTGTTTAAAGAATTCAGAGaacttattttatatttatgagTACAAGAATAAACGATTAATATCAGAGATGATTGTGGAAGTAATTCCGGAATTAAAGGAAGTGATTTGTGAGTTTAATGATCAAATGAGCTGTTTTGTCTGTTATGACTGCTACGAAGTGATTGTTAAGGCAATAGAATTGCGTAGATTTAGCATTGATAACAATAAAAGTCAAAGAGTTGATAAGAAGCCAATTTTacaaagcataaaaattgagaaagaagAATCTGATGTTGAGGATTATGACAATTATCACTTACAGAATGTCTCAGTTGTTATTGAAAGACTTTCAGACAATGAGGAACATTCATTTACTGAACACAACAAGTCAACGAGACGTAGTAGATCTGAGAAAAGAGCAGCAGCTAGAAGGGCGGCGGCTGTGCATACAAAGCAGGAATACAGCGATGACTCTATGGATGAGATTGAAGAGTACAGACGAGAAACATCACATAGGAGAGGTGTCAAGAAGGAGAAAGAGAAAGGATGTCTTTATTGCCGGAAGTCATTTATGTCCAATAATCTTTTGAGATATCACTACGAGTATGAGcatgatgataaaaagttaCAGTTTGGATGTAAGGAATGTAATAAGAGGTTCCTTGAAGAGGACTTGTTCACAAAGCATGTATTTTTGGAGCATCAAATTGAGTTGAACTCGGATAATGTTTTAGATTATGCGATGCGAGTAAAGCTGGAAAAGAATAATTATGAATGTGAAGTTTGCATGGAAAAGTTCAAAACTAAATCGAAAATTGAGCATCACATTGTACTGGATCACTTGAGGGATatggatgtaaaaaataaatcatgttCAATTTGCATGGAAGgatatgatgatgaagattcGGTCAGAAAACATTATGAAATTGTCCAtaagaatgagaaaagaacATACTCGTGTAATAAATGCTTTGAGACATTCACAAATGAGTATCGTTTAAGGCGTCATAGAAAGGATGTACATGGGGTATTACCTAAAATCTGTAATATCTGTAATGCagaattttccacaaaacGTGAATTTAATCTTCATCAGTATTTGCACTGTGACTATCTTGCTGAAAATAGAGATCcagttaaatttgaatgtatCCTCTGCTCATTTTACACATACGATCAAAATGAACTTTACGATCATCTTCCTTTCCATACTAAAGATTTTGACCAGGACGAACGATTAATTGTGTGCATTAATTGCAATACCGTTGTTAAGAATTTCGAATGTCTGCATTCTCATACAGGCGATCATAACGAATTTTTGACTCATGAATGCTtaaaatgtaacaaaaaattcGCTATGGGCTCCAAATTATTAAAGCACTTAATGAGACACGATGAATCCACCCTTTTAAGATGCCCACATTCTGATTGCAATTTTTCCACTTTAGAAAAGTATTCATTGGATATTCACATTAAGCATaagcatgaaaatattgttttacaTCTCTGTCAAATTTGCGGGACATCGTTTAGCGAACGAGCTAGTCTGAAGAATCACATCACAAATGTACACGAAACCGAGAATAAATTGTATAAATGCAACTTGTGTCCAATGACGTTTAGAATACCATCACATTTGAGGAATCATCAGTCAGTGCATTCAAATGAGTACACGTTTCCTTGCGACTTTCCTGGATGTCCGAAAATATTCAAGGCAAAACGAAATCTTTTAAGACATAAAGTATTTCATGATCCTAGCAAGTTGAACTATAAATATCACTGTAGCTTTGAGGGATGCGgcaaaaagtttctcaaaaaTGACGGCCTCAAACGTCATATGCTCACTCacacaaaaaTCAAGCCTCACGAATGTACGTTTGAAGGATGTGATCGTGCATTTTCACAGTCAAATGATTTGTTTAAACATTTGAGACAGCATTATGGACATGACAGAGTACATTTTTGCAAATATGACAATTGTGGAGAATCCTTCCGTTTGAAAGCGGAACTACGTTTGCATGAAGCCATTCATTATAAGGCATGA
- Protein Sequence
- MEGCRLCLKNSENLFYIYEYKNKRLISEMIVEVIPELKEVICEFNDQMSCFVCYDCYEVIVKAIELRRFSIDNNKSQRVDKKPILQSIKIEKEESDVEDYDNYHLQNVSVVIERLSDNEEHSFTEHNKSTRRSRSEKRAAARRAAAVHTKQEYSDDSMDEIEEYRRETSHRRGVKKEKEKGCLYCRKSFMSNNLLRYHYEYEHDDKKLQFGCKECNKRFLEEDLFTKHVFLEHQIELNSDNVLDYAMRVKLEKNNYECEVCMEKFKTKSKIEHHIVLDHLRDMDVKNKSCSICMEGYDDEDSVRKHYEIVHKNEKRTYSCNKCFETFTNEYRLRRHRKDVHGVLPKICNICNAEFSTKREFNLHQYLHCDYLAENRDPVKFECILCSFYTYDQNELYDHLPFHTKDFDQDERLIVCINCNTVVKNFECLHSHTGDHNEFLTHECLKCNKKFAMGSKLLKHLMRHDESTLLRCPHSDCNFSTLEKYSLDIHIKHKHENIVLHLCQICGTSFSERASLKNHITNVHETENKLYKCNLCPMTFRIPSHLRNHQSVHSNEYTFPCDFPGCPKIFKAKRNLLRHKVFHDPSKLNYKYHCSFEGCGKKFLKNDGLKRHMLTHTKIKPHECTFEGCDRAFSQSNDLFKHLRQHYGHDRVHFCKYDNCGESFRLKAELRLHEAIHYKA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00319983;
- 90% Identity
- iTF_00319983;
- 80% Identity
- -