Basic Information

Insect: Chironomus tentans
Gene Symbol: RREB1
Assembly: GCA_963573255.1
Location: OY754303.1:47534922-47540346[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 9.4e-05 0.005 17.4 0.3 1 23 162 184 162 184 0.98

2 15 0.00042 0.022 15.4 0.2 1 23 197 219 197 219 0.98

3 15 0.00029 0.016 15.9 5.2 1 23 225 247 225 247 0.98

4 15 7.6 4e+02 2.0 0.3 9 23 334 349 325 349 0.79

5 15 0.071 3.8 8.4 3.8 2 20 355 373 355 375 0.94

6 15 6.2 3.3e+02 2.3 0.2 1 21 422 442 422 443 0.93

7 15 0.019 1 10.2 0.2 1 23 573 595 573 595 0.97

8 15 0.00033 0.017 15.7 1.0 1 23 604 626 604 626 0.99

9 15 0.0014 0.075 13.7 2.4 1 23 632 655 632 655 0.97

10 15 0.0012 0.063 13.9 2.1 1 23 999 1022 999 1022 0.95

11 15 0.00012 0.0062 17.1 0.4 2 23 1289 1310 1288 1310 0.97

12 15 0.13 6.8 7.6 4.2 1 23 1316 1339 1316 1339 0.96

13 15 0.36 19 6.2 1.9 1 23 1416 1439 1416 1439 0.94

14 15 0.015 0.8 10.5 0.6 3 23 1483 1503 1481 1503 0.95

15 15 0.056 3 8.7 5.2 1 23 1509 1531 1509 1531 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	9.4e-05	0.005	17.4	0.3	1	23	162	184	162	184	0.98
2	15	0.00042	0.022	15.4	0.2	1	23	197	219	197	219	0.98
3	15	0.00029	0.016	15.9	5.2	1	23	225	247	225	247	0.98
4	15	7.6	4e+02	2.0	0.3	9	23	334	349	325	349	0.79
5	15	0.071	3.8	8.4	3.8	2	20	355	373	355	375	0.94
6	15	6.2	3.3e+02	2.3	0.2	1	21	422	442	422	443	0.93
7	15	0.019	1	10.2	0.2	1	23	573	595	573	595	0.97
8	15	0.00033	0.017	15.7	1.0	1	23	604	626	604	626	0.99
9	15	0.0014	0.075	13.7	2.4	1	23	632	655	632	655	0.97
10	15	0.0012	0.063	13.9	2.1	1	23	999	1022	999	1022	0.95
11	15	0.00012	0.0062	17.1	0.4	2	23	1289	1310	1288	1310	0.97
12	15	0.13	6.8	7.6	4.2	1	23	1316	1339	1316	1339	0.96
13	15	0.36	19	6.2	1.9	1	23	1416	1439	1416	1439	0.94
14	15	0.015	0.8	10.5	0.6	3	23	1483	1503	1481	1503	0.95
15	15	0.056	3	8.7	5.2	1	23	1509	1531	1509	1531	0.98

Sequence Information

Coding Sequence: ATGGAACGACGTTTATCAACAAATTCTGAGTCATCACTCGAGCCAGCCGATGTGAGTTCATCACACAAAGCCCTGAGTACGTCAGACGCAAATTCATCGTTAGCATTAAAGACGAGTCAAGACAGTGACAATGTTGAGTCGGATGAGAATGAAgactatttgaataataatacatgtaagaataataaaaatgacatcGAAACAGTCGCAAATGTTCGATCATCGAGTGAGACACGAAATGTAAGCAATGTgcatgataataataataaagacacAATTGTACGACGAGATAATTTAAGGCAATTGATGGATAAGATGttgcaaaagaaaattatgagtGTAACCGCACGAaatcacaataataatattaataatcatAGTTCAGATGAGAATATGAATTCTAGTCACGATGCACCCGACAGTGACAATACAACGATAATGAATACAACATCGACAGGTGCAACGAAAGATGAAACCACAAAATACGTCTGTCCAATATGTGATGTTGTATCAATAACACAACATGACTTTACAAATCACATTCGTAATCATAACAATATGCGTGACTCATCCGACGATGGTTCATCATTTACATGTCGAATTTGCTCAAAGGTCTTATCGTCGGCATCATCGCTTGATCGTCATGTGCTTGTTCACACTGGATTGCGTCCCTTTAACTGTCGATTTTGCAGTTTAACATTCACAACCAACGGAAATATGCATCGACATATGCGTACACATAAACAGCCACAACATGACCGTGAAAGTTATGAAAGTGATGGATCGACTGATTCAAGTGGAAGCTCACATGGAAATAATCgaaaagttaataataattttacacaTAAGAGAAAAAGTGCAGATGATGAGCATAATATTAAGCGTAAAGTTAGAGCGGTAAATCATGTAATGTCACCAAGtcaccaacaacaacaacaacaacagcaacagcaaatgcaactgtttcaaaaattctgctGTCCTGTTTGCATTCGTAATGACTTTTCCAGCATGATAAATTTGGAGAATCACATGGACAAGGAACATCCAACAATCCCAGCAAAGTGTCGTCATTGTGAGATGGTATTCAAAAGCCATAAAGCATTAAATGCACACCGATGTGGCAACAACAAATCAAATACAAATGTCCAACAAGGCTTCAGCGATATCTCATCaattatagatttttcatgtgaaaaatttccacttaTCGCTCAGAAAATGTGCGAAGCAAGTATTCGTACACCAATAACAAATCAAAAGTATGAATGTCGGTCGTGTTATCGAGCATTTCCATGTGCAAGTGCTGTAGAAATTCACATGAAGGAGTGCAATGGTACACATGAATATTCATCACACAAACGAAGACGGTCGAGAAGTGAGACGTCAGCTGATGATGAGGAAATGAAGCGTGAAGATTTCTTTTCCAATCTTGCACTTCAGAATCGTCCACATTCTAGATCTCCGTCACTTGACAAGTCATTCTCATCAACATCGATGGTCATTAAACAGGAATTGAGAGAAACGCCGccattttatcaatatttcagTGAGGGACGTGATTTTGCTGATATTGAGTCAATTATTAAAGCAACATCATCTGGTGGCCTTGAAAAACCAATTCCAGAAAAAGACCAGCACTTGTACAACCGCGAGGAAGAAGAAGCTCAAGATTCATTCACAATCGAGttcagaaaaatgaaattacgTGGTGAATTCCCATGTCGACTGTGCACGATGGTCTTTCCAAATTTACGTGCATTAAAAGGCCATAACCGTGTACATTTGAGTGCTGCTGGACCTGGTCCATATCGATGCAACATGTGTACATTCTCAATTAACGATAAACAGGCATTGATTCGTCACATGCGTAACCACAATGGAGATAGACCATACGAGTGTGGTTTATGTAATTATGCATTTACAACCAAGGCAAATTGTGAACGTCACTTGAGAAATCGACATGGAAAAGCAACAAGAGACGAAGTTAAACGCGCAATAATCTATCATCCATCAGAAGATTCAAGTGTTGAAGATCACAGTAAGAAAATTGCTATGTATACAACAAGTCAGCGCTATCAACGTGGAGACAATGGAGACGAcatggatgatgatgatgatttagaTCCAAGTGGACGAAGTACGCCAGTTTCACATCTGAAAGAAATGTTGAATTCACGGAATGAAGAGTCACCAAGTCGAATTCAAGTTAAAAGCTTGGCTGAATTGAAAtctcaacaaaattttgaaaatgacatTGAGGAAGAAGAGAATGATTCACATCATCATCGGCCAGTTGACTTGTCAATGGATGCACTTGACTTGAGTAAGAAAACTGACTCATTTGTTCATCATAGTAATGGAAATGACGCATCCGGTGAAGATGAGAGCGACCAAGAgagaaataatgatgatatgGATCATCCAGAAATTCCTAAATTTGATCTCGCAATGTTTGAAAAAAGCTTCTTGATGCAACAACAGTTGCTTAATGAAGCATTACCTAAACTCGATCCAGCTCAAATGTTCAACTTAGCTCAAATGTATCGAACATTTGGATTTCCAACACCTGGCTTTCCAATTCATCCAGCATTATTCCTACAAAATCCATTGTTACTTAATGAtacaatgaaaaacttttttcaaaaggaTATGATGCCACCAACACCCCCTCAAAGTAATTCAAGTCAAACACAGACAGCAGGTAGCATGTCTGGTGGAAGTTTGATTGTTAATCCATTCGTATCACCTGATTCCTCACCGACTGGTCCACCTTCACAAATTCCTCGAACATTAGAACAATCACCAGTTGgaaattcaattccaattcCGCCATTCCCACCTACACCACAAGAATCgccaaagaaaatttcaacaacgCCAAATCATCAGcatattaatttacaaaatcataCCGGACCTGTTAAAATGGTCATCAAAAATGGTGTCTTAATGCCAAAACAGAAGCAACGTCGTTATCGTACAGAACGTCCATTTGCATGTGAACATTGCTCGGCTAGATTTACTTTACGCTCGAATATGGAGAGACACATTAAGCAACAACATCCACAATTTTGGGCACAACGACAACGTGGAAATCATGGATTAATGCGACGCGGTCCATCGTCTGGCTCATCACAAATGCAAATGAATGGACCACCTATGATGCCAACACTACAGGCATCTGGATTTGGTGGAATATCTGATCAAGTTAAATATGCAATTTTGGCACAGCAACTAAAAGCTCGTGACAGTCCAAAATTATCACCACAGTCATTTCCACCATTACCTTTACCATTACAAACACAATTGACGATTCCTGATGAACTTCCAGTGAAGAATGGAAAGGGAAGTGAAAGGAATTCAGCAGCAAATGCCAATCATGACGACGATGAACCACAGTTGGTAATTGATGAGGATTTTCATGCAGAAGATTTAAGCAAATCGTCAGATGGTGTGAATGATAAGAACACGGCAGCACGTAAGGTGGCCGATAATATTTTAGAGGAAGCAATGAAAATGGGGAGCAGTCATGCAAAGAATTTAATCAAAGCTGCTCAAAAGCAAGAACGCGAAAACGAAAAGGAATCTGAAAAGGAGCATAGAAATGACAACATTAATAGAGAAGAAGGAAATGATCTCGTTTCTGTATCTAAATTGATTGACAATGCAACAAATTCAATGGTGTTGTCAAACTACTTCAGTCGACCAGAGCCGCCCATGACAGATCATAGTGATGAAGAAGGTCTCGTTGCATCAGGAAGTGCTTCTGAGAGTAACAATTCAGGAACTGATGATCCAAATCCATCAAGTAATGgcaaagagaagaaaaagtcaGCATATAGTTTAGCACCTAATCGTGTCTCATGTCCATATTGCCAACGTAAATTTCCATGGTCAAGTTCATTACGACGCCATATTCTTACACATACTGGACAAAAGCCATTCAAGTGCTCTCAATGTCCATTGTTGTTCACAACGAAAAGCAATTGCGATCGTCATTTGTTGAGGAAGCATGGGAATTGTGAAGATGCTGTATCCCTGCAACTTCCAATTGATGAGATGCCAGAGCCTGTCAAGGAACCAGTTCGATCAGCAAAGGAAATGAAGCTTGAACAAGCAGAAAATCCAAAAGAAACATCGTTCAACATTCCATCCGCTCTCCAATTGCCAATTCTCACAAAAATCGAAAACTCTTCATCACCAGCTCAACAACAAGCTCCAGTCATGTCATCTGACCTGCCATTCAAGTGCCATCTTTGTGATGGATCATTTGTTGATCGTGTTGGATGTTTGGAGCACATCAAGTCCTTACATTCACAAGACTTTGCTGTTCTCATGCAGAAAGTTCAATTGGAGAGTGAGGAGAATGTCAATGGATCTCCAGATGATGACGATCATGATAAGAAGGGAAAATATCCTGATTATGCTAACCGTAAAGTCATCTGTGCTTTTTGCTTACGTCGCTTTTGGTCAACTGAAGATTTGCGTCGTCACATGCGAACTCATAGTGGTGATCGTCCATTTTCCTGCGACGTCTGCCTGCGTAAATTCACCTTAAAGCACAGCATGCTCCGTCATCGTAAGAAGCACTCAAATGCACCACACATCAACAGTTTCCAAAAGCCAGAGAATGGAGATGCCAATGGAAATGGCTCAAGCATCAATAATAGTGCATCAGACATATCTGACGATGAATCATCAACAATAGCAACAATGAACAATaagaaattaatggaaatgatgACAACACAAGAGAAGACCGATCAAGAATTCATGACTCGAATGCTAAATCCAATTAATAAGGAGCTATTCCTTAAATTTCAAGAGAAATTCTTCAACATACAACAACAATTAAGTGGATCAGTAGGATCAAATTTATTGGGAAATCTACTCGGCATTAGCGATCAAGGTGTACTGAACAACATGATAAATGCATCTGCTGACGAGGCCGCAAAAATGTTGGGcgttgataaataa
Protein Sequence: MERRLSTNSESSLEPADVSSSHKALSTSDANSSLALKTSQDSDNVESDENEDYLNNNTCKNNKNDIETVANVRSSSETRNVSNVHDNNNKDTIVRRDNLRQLMDKMLQKKIMSVTARNHNNNINNHSSDENMNSSHDAPDSDNTTIMNTTSTGATKDETTKYVCPICDVVSITQHDFTNHIRNHNNMRDSSDDGSSFTCRICSKVLSSASSLDRHVLVHTGLRPFNCRFCSLTFTTNGNMHRHMRTHKQPQHDRESYESDGSTDSSGSSHGNNRKVNNNFTHKRKSADDEHNIKRKVRAVNHVMSPSHQQQQQQQQQQMQLFQKFCCPVCIRNDFSSMINLENHMDKEHPTIPAKCRHCEMVFKSHKALNAHRCGNNKSNTNVQQGFSDISSIIDFSCEKFPLIAQKMCEASIRTPITNQKYECRSCYRAFPCASAVEIHMKECNGTHEYSSHKRRRSRSETSADDEEMKREDFFSNLALQNRPHSRSPSLDKSFSSTSMVIKQELRETPPFYQYFSEGRDFADIESIIKATSSGGLEKPIPEKDQHLYNREEEEAQDSFTIEFRKMKLRGEFPCRLCTMVFPNLRALKGHNRVHLSAAGPGPYRCNMCTFSINDKQALIRHMRNHNGDRPYECGLCNYAFTTKANCERHLRNRHGKATRDEVKRAIIYHPSEDSSVEDHSKKIAMYTTSQRYQRGDNGDDMDDDDDLDPSGRSTPVSHLKEMLNSRNEESPSRIQVKSLAELKSQQNFENDIEEEENDSHHHRPVDLSMDALDLSKKTDSFVHHSNGNDASGEDESDQERNNDDMDHPEIPKFDLAMFEKSFLMQQQLLNEALPKLDPAQMFNLAQMYRTFGFPTPGFPIHPALFLQNPLLLNDTMKNFFQKDMMPPTPPQSNSSQTQTAGSMSGGSLIVNPFVSPDSSPTGPPSQIPRTLEQSPVGNSIPIPPFPPTPQESPKKISTTPNHQHINLQNHTGPVKMVIKNGVLMPKQKQRRYRTERPFACEHCSARFTLRSNMERHIKQQHPQFWAQRQRGNHGLMRRGPSSGSSQMQMNGPPMMPTLQASGFGGISDQVKYAILAQQLKARDSPKLSPQSFPPLPLPLQTQLTIPDELPVKNGKGSERNSAANANHDDDEPQLVIDEDFHAEDLSKSSDGVNDKNTAARKVADNILEEAMKMGSSHAKNLIKAAQKQERENEKESEKEHRNDNINREEGNDLVSVSKLIDNATNSMVLSNYFSRPEPPMTDHSDEEGLVASGSASESNNSGTDDPNPSSNGKEKKKSAYSLAPNRVSCPYCQRKFPWSSSLRRHILTHTGQKPFKCSQCPLLFTTKSNCDRHLLRKHGNCEDAVSLQLPIDEMPEPVKEPVRSAKEMKLEQAENPKETSFNIPSALQLPILTKIENSSSPAQQQAPVMSSDLPFKCHLCDGSFVDRVGCLEHIKSLHSQDFAVLMQKVQLESEENVNGSPDDDDHDKKGKYPDYANRKVICAFCLRRFWSTEDLRRHMRTHSGDRPFSCDVCLRKFTLKHSMLRHRKKHSNAPHINSFQKPENGDANGNGSSINNSASDISDDESSTIATMNNKKLMEMMTTQEKTDQEFMTRMLNPINKELFLKFQEKFFNIQQQLSGSVGSNLLGNLLGISDQGVLNNMINASADEAAKMLGVDK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00319960;
90% Identity: iTF_00319960;
80% Identity: -