Cten017037.1
Basic Information
- Insect
- Chironomus tentans
- Gene Symbol
- -
- Assembly
- GCA_963573255.1
- Location
- OY754305.1:15729582-15732611[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.024 1.3 9.9 2.4 1 23 696 718 696 718 0.98 2 11 0.078 4.1 8.2 2.1 1 20 723 742 723 744 0.93 3 11 0.00034 0.018 15.7 2.0 3 23 746 767 744 767 0.96 4 11 0.045 2.4 9.0 2.4 1 23 774 797 774 797 0.97 5 11 0.00014 0.0075 16.9 0.5 1 23 805 827 805 827 0.97 6 11 0.0086 0.46 11.2 0.3 2 23 832 853 831 853 0.96 7 11 2.6e-05 0.0014 19.2 6.9 1 23 859 881 859 881 0.99 8 11 6e-08 3.1e-06 27.5 2.2 1 23 885 907 885 907 0.97 9 11 4.9e-06 0.00026 21.5 5.1 1 23 913 935 913 935 0.98 10 11 0.0049 0.26 12.0 0.9 1 23 944 966 944 966 0.98 11 11 1.5 81 4.2 0.8 2 20 981 999 980 1003 0.92
Sequence Information
- Coding Sequence
- atgagtcatcaaattaaaatcaatttatcaaaTGAAAGTTCAGCTTCACAAACTCTCCAGCCCATAATTATCTCATGGACAAATCCATCAACAGACAACCAATCACAAATGATTGACGACACACGCATAAAGCAGGAGGACGAGCTGCAAATTATCTCACAAGTCATTCGAGAGGTTCCACATCCAGCGAATAGAAAATCAGCAGAGATTATAAGTCCAACGAGAGTTTTGAGGAGTCATGGGAAAGTTGACAAGATTCCAGTTATTGTGACtcagaaaaatacaaaaatatcccCAAAATCAAGAAGTAACTCAAAGCTTACTAATGAGACACAGTCTGTTGAAGTTTTTACAAAAACCATCgatattaaaactaaaaagtCATCATCTAATGGAGAAACTAGTCCATGGACAACAACACTCCAAAGTAAAAGACCCATAAAGAGTCAAGctttaaacaacaaaattgaatcaaattcaaacaaaaaatcatcaaaaaagttgGTAAAAATTCCATCGAAAAGTGATGAACCAGAAAATCCAAAGGATGGTCAGCCTTCAGGACCCAAAAGAAGGTTAACTTCAAAAACAGTAATCGAAGTCATACAGGAACCAAAAggagatttaaaaattgatgacaaGATAGCCAAGCAGCTTAAGAAggataaaaatggaaattctctaaaaattacaaataaattagAGTCGATGTCAAAGACACCTGCAACTATTAATAAAAGGAAGTCATGCTCACCGTTTGAAGCTTCATCAGAAAcatcatttaataataaatacataaaGAAAGAGATGGAACTGGATATAGCTCCAGAAATTAATACAGGATCAGAagtatcaacaaaaattccaaaaccttcaataaaaatggaacCAGAAGACCAAAACTCAAGAACCTCAACTGCCATCAACATAAAAAAGctccaaaaccttgaaaaatcatcaacaaacCCCAAACGCATCACAAAATCACCAATCACAGTAGTTAAAGATGAAGATGTTGACGAGATCACAATTAAAGTGACAGACATTAAGCCAAAATCAGAACCAGTCGaaactttttcacaaaatgGTTCCAACAACTCAGAAACAACCAATTCAAGtcctttgaaatatttcaatctatcaagttcctcaaaaatttatgaatcaggATTAAATGATCAGTATAGAAATAGATTTATTCCTATAACTAAATCTTCGTCAAGTAGCATTAACGTCACATCAAGCAATGGTCAAATCCCAGCAGATTCTAACAACCAAGAAATCAAATCATCAGCAAAAGAACCAGAATCACCAAAATACGAGGATGaagatgacgatgatgatgatgaagatagACTAATTATcaaggaagaagaagatgataTAGAGACCATAGACATAAGTGATAGTGACGATGAGAAGCCTGGAAATTTAACaccaaagaaatttcaaaattcctgGAACAACCTAACCAGCCAATCATTGATTAATGGTGACTCAGACAGTTTAACATCAAGCAATCATGTCTCAATATCATATCCATCAATTGATGGATCAACCAGCCTACAACCTCCTGTCATTCAAATATCATATCAGTTTCCAATGGACAGCCAACACTCAGCATCATCGACACagatacaaaaacatttttcatcatctagATTGGAACCATCAAGTCAGATGCACAAGAATTTGGGTCAGCAGTCGACTTTTGGTCAATTATTCAGTAAGAATCTTCAACAGTCATCATCTAAGTACAATTTGGGTCagaataatcaaaatatgGATAAGTCAAAGCTACCATCCAAAAATATGAATGTATATCCATCAACAAGCCAAGTTGGTGCCTCTACATCCAGTAATAACCAACAAATAAGTCAAAAACGAAGACATTCAGCTCTAATgactcaaaattcatcaacaattCCTCAATCATCATCAAAGTCACTTGAACATCTATCAAAGAAGCAAAAAGTCACTTCCGATCCACATCAGATTCCAATAATTCCATATAATCCATCGACAATCCCACCAAGAAGAATATCATCAACCTCATCTGACGGAAGCTCATCAACTTCACATCCATTTCAATGTAAAATGTGTATGGCAATATTCAAGAGGAAGATCGACATGATTCATCATTTAAAGTCACATTCGGAAGCGAAATTTGAGTGCCAAAGGTGCGGAAtgaagtttaaatttgaaggaTATTTCAGTAAACATGAGTGTATTGCCTGCAATCTTTGCAACAAGACATTCTTCCTCAAGCAACAGCTTCGAAATCACCAAAGGAATGAGCATGACATCCAGATGGCCATGTATGAATGTGATCTCTGTGATAAGAAATTAAGGTACAGACATGGAGTGTTGTATCACATGTCAAAGACTCACATGCTGTATCTTGAGGATAAATATGCTTGCGATGTGTGTGGCAAGAGATTCAAACTTAAGGAATCAATCAGACTTCACATCAAGAACCACGAATCAGTCATTGAATGTAATTTATGTGACAAAAAAGTCAAgagaatcaatcttaatgtccaCATGAAGAGCGTCCATGCAACAGAGAGAAACTTCAAGTGCCGAATATGTCGAACGACTTTTAAAACCAAGGAGTGCCTTAAAAGTCACATGAGGACTCATGAGAAGAGCTTTGAATGTACTGAATGTGGTAAAAGATTTTCAAACAAGTCACATTTGAAGGAACACATGGAATGGCATAAAAATCCAGAAGCTTACAAGtgtaaaatttgtcaaaaatcattttcacaaAAGTATTGTCTTAAGGCACACGTCAAGCTACATGAAAGTGGACATTTATTCACGAAGTTCAAATGTTCTTCATGTCCTTATTCGACAGATAaacctgaaaattttgaaaaacatgaaTTGAAGCACAAAAGGcaggaagaaaatgaagaaatgaggaaaaattggCTGCAGTGTGAAAAATGTCCTGTAAAATTGAAGAACAAGTTGAAGCTAGCAACGCACTACTGGAAGAAGCACAGCGAAGTTATgcctaaataa
- Protein Sequence
- MSHQIKINLSNESSASQTLQPIIISWTNPSTDNQSQMIDDTRIKQEDELQIISQVIREVPHPANRKSAEIISPTRVLRSHGKVDKIPVIVTQKNTKISPKSRSNSKLTNETQSVEVFTKTIDIKTKKSSSNGETSPWTTTLQSKRPIKSQALNNKIESNSNKKSSKKLVKIPSKSDEPENPKDGQPSGPKRRLTSKTVIEVIQEPKGDLKIDDKIAKQLKKDKNGNSLKITNKLESMSKTPATINKRKSCSPFEASSETSFNNKYIKKEMELDIAPEINTGSEVSTKIPKPSIKMEPEDQNSRTSTAINIKKLQNLEKSSTNPKRITKSPITVVKDEDVDEITIKVTDIKPKSEPVETFSQNGSNNSETTNSSPLKYFNLSSSSKIYESGLNDQYRNRFIPITKSSSSSINVTSSNGQIPADSNNQEIKSSAKEPESPKYEDEDDDDDDEDRLIIKEEEDDIETIDISDSDDEKPGNLTPKKFQNSWNNLTSQSLINGDSDSLTSSNHVSISYPSIDGSTSLQPPVIQISYQFPMDSQHSASSTQIQKHFSSSRLEPSSQMHKNLGQQSTFGQLFSKNLQQSSSKYNLGQNNQNMDKSKLPSKNMNVYPSTSQVGASTSSNNQQISQKRRHSALMTQNSSTIPQSSSKSLEHLSKKQKVTSDPHQIPIIPYNPSTIPPRRISSTSSDGSSSTSHPFQCKMCMAIFKRKIDMIHHLKSHSEAKFECQRCGMKFKFEGYFSKHECIACNLCNKTFFLKQQLRNHQRNEHDIQMAMYECDLCDKKLRYRHGVLYHMSKTHMLYLEDKYACDVCGKRFKLKESIRLHIKNHESVIECNLCDKKVKRINLNVHMKSVHATERNFKCRICRTTFKTKECLKSHMRTHEKSFECTECGKRFSNKSHLKEHMEWHKNPEAYKCKICQKSFSQKYCLKAHVKLHESGHLFTKFKCSSCPYSTDKPENFEKHELKHKRQEENEEMRKNWLQCEKCPVKLKNKLKLATHYWKKHSEVMPK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -