Cten002394.1
Basic Information
- Insect
- Chironomus tentans
- Gene Symbol
- -
- Assembly
- GCA_963573255.1
- Location
- OY754302.1:27952694-27954586[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0018 0.094 13.4 2.4 3 19 132 148 131 151 0.93 2 13 1.5 80 4.2 1.0 1 20 160 178 160 180 0.85 3 13 1.4e-06 7.3e-05 23.2 0.9 3 23 185 206 183 206 0.96 4 13 1e-05 0.00054 20.5 0.3 1 23 265 287 265 287 0.97 5 13 0.0014 0.071 13.8 0.5 1 19 293 311 293 314 0.93 6 13 5.8 3.1e+02 2.3 2.6 3 21 333 351 332 352 0.91 7 13 6.3 3.3e+02 2.2 0.3 12 23 372 383 362 383 0.87 8 13 0.057 3 8.7 1.2 1 23 389 411 389 411 0.97 9 13 7.8e-06 0.00041 20.8 2.2 1 23 417 439 417 439 0.97 10 13 2.9e-05 0.0015 19.0 1.7 1 23 446 468 446 468 0.98 11 13 4e-05 0.0021 18.6 2.0 2 23 473 495 472 495 0.96 12 13 0.0011 0.059 14.0 1.5 1 23 498 520 498 520 0.97 13 13 2 1.1e+02 3.8 4.1 1 23 528 550 528 551 0.88
Sequence Information
- Coding Sequence
- atgattaaatccAGTGTTATAATAGTGGAAAACAGTAAAGGAGATGTTTTTATCGTCgaagataaagaagaaaagtcacaaattgataaaatattaaattctagtgaggatttaaaaagttttcaaaatatTAACGTATCCGAATTACAAGATATTGAGGAAGAGGATATTATCGAAGAATATTTAGACGAATATttggatgaaataaaaagcgAAAGTGTGTACAATGTCTATGCAGATCATCAGTATACAATTGTCGAGGAAAATAACGCAGATGAGGAGGAAAGTTGTGAGGAATCGCTAAACTTTGAGGATGCGTTTGGATCCGATAATAAAACGAACAACAGTAAAAAGCAATATCATAAGTTTCATCAATTAACAGGAAAAGCAGCATGCAAATATTGTGAAACAGTTTTTAGGTCAAAGGAATCATTAAAGCAACATAATTGCAAATATCTACAATGTGACccgaaaaatttcatttgtcgGATCTGTAATAAGGAATTAAGCAAGAAGACATTCAGTAATCATTTGCATGAAGGAATCTTGGATTGTCAATATTGTTCAAAGTCATTCGTCAATCCGAGAAACCTAAAAACGCACATCAAAaagattcataaaaatgaagaattcaTACCGCCCAAGTCACCAAATAGAACCTTTATCAAAGAGCTCAAAGTAGAGGATAATGCAGAAATAGCTCTTTTGGACGATCAAACAGGCTTTATTACATCAAAACCGTTGGAAGGAGAAGAGTGCACAAAAAAGAAGTATGCTAAGAAAGTTGGGCGATTCGAGTGTGATTTGTGTGGAAGAGTATTTTCTTTTGCCCGTAGTCTTACAACACATCTTTTGCTTCATACCAAAGAATATCGTTTTGTCTGTGAGaTCTGTGGTGAgaaattcacaacaaaaacTGGCATTGCCAAACATTCATGTTTAAATCGTAAACGAAAGCGCCCGGAAAAGGATTTCAGAACTGTAGATGTGAGACATTGTAAATACTGTGACTTATGGTTTTCATCTTACGAAGAAAATAGAAATCatgtttgtaaatttcaaCCATCAACTGATCAAAAAAACTTTGTGTGTCGCTTTTGTATGATTGAAATGTCAAAGAACAGTTTTAACAAGCACATGACGCGACATTTGAATCCACAAGAATATGCTTGTAAGCTTTGTGATAAGAAATTGGCATGCGAAAAATCTCTAATAAGGCATTTGTCAATTCACAGTGGACAACGACCTTTTAGCTGCAATAATTGTGACAAAAGCTTTATAAATAAAACTCTTTTGATACGTCATTCGAGATTTCATGGAATACAAGTGCAACAGTACAAATGTCCTATATGCGAAAAAGAAATGGCTTCAAAATATCATCTCAAAACTCACATGCAGTTGCACAGTGAATGCCAAACTTGTAAGATATGcaaagaaagtttttcaacACGCGAGAAACTTAAAGAGCACTATCAATCAAGTCATGAGCCGTTTCGTTGCTCTTTGTGCTCAAAAACATTTGTTCTCGctagatatttaaaaatgcacGAAAAACTTCACACCGGAGAAACAACAAAGCATTACAATTGCATTTATTGCCACAAGCAGTTCAGTAAAAGAGCTTTAGCAAATCATGTGTTTTCGTTGCATCATGAATTCTTTAATGAATGGAAGGACAAAAATATGGAGTTTATTGTTTCATAG
- Protein Sequence
- MIKSSVIIVENSKGDVFIVEDKEEKSQIDKILNSSEDLKSFQNINVSELQDIEEEDIIEEYLDEYLDEIKSESVYNVYADHQYTIVEENNADEEESCEESLNFEDAFGSDNKTNNSKKQYHKFHQLTGKAACKYCETVFRSKESLKQHNCKYLQCDPKNFICRICNKELSKKTFSNHLHEGILDCQYCSKSFVNPRNLKTHIKKIHKNEEFIPPKSPNRTFIKELKVEDNAEIALLDDQTGFITSKPLEGEECTKKKYAKKVGRFECDLCGRVFSFARSLTTHLLLHTKEYRFVCEICGEKFTTKTGIAKHSCLNRKRKRPEKDFRTVDVRHCKYCDLWFSSYEENRNHVCKFQPSTDQKNFVCRFCMIEMSKNSFNKHMTRHLNPQEYACKLCDKKLACEKSLIRHLSIHSGQRPFSCNNCDKSFINKTLLIRHSRFHGIQVQQYKCPICEKEMASKYHLKTHMQLHSECQTCKICKESFSTREKLKEHYQSSHEPFRCSLCSKTFVLARYLKMHEKLHTGETTKHYNCIYCHKQFSKRALANHVFSLHHEFFNEWKDKNMEFIVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -