Cten017453.1
Basic Information
- Insect
- Chironomus tentans
- Gene Symbol
- -
- Assembly
- GCA_963573255.1
- Location
- OY754305.1:18393216-18394445[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0011 0.056 14.1 2.0 2 23 110 131 110 131 0.96 2 10 3e-05 0.0016 19.0 2.6 1 23 137 160 137 160 0.96 3 10 0.015 0.82 10.5 0.7 7 23 178 194 172 194 0.90 4 10 0.7 37 5.2 0.1 2 23 199 220 198 220 0.93 5 10 6.7e-05 0.0036 17.9 2.1 1 23 228 250 228 250 0.98 6 10 1.4e-05 0.00075 20.0 3.0 2 23 255 277 254 277 0.95 7 10 8e-07 4.2e-05 23.9 1.7 1 23 283 305 283 305 0.98 8 10 0.00075 0.04 14.6 2.0 2 23 314 335 313 335 0.97 9 10 0.0016 0.085 13.6 0.9 2 23 350 372 349 372 0.96 10 10 0.0003 0.016 15.8 1.3 1 23 377 399 377 399 0.97
Sequence Information
- Coding Sequence
- ATgtcgaataaaatttcaaattttttcaaagtcgAACCAAAATTGAATGCGGAATCAGATTTAAATTCTGGAACATCAGTCAAAGTAAAGAAGGAACAGGAAGAACAttttgacataattttaagtgaaatCGAGtcaaaaatggtaaaaattgaagaaatttactcAAATCAACCAGAAGCTTGGGATTGTCGagtaaaattgcaaaatatcaaggaagaaattcaaaatggaactacaaaaatcaacaaacgAAGAACAATTCCAAGGCACATTGTCAAAAACAGCTCAAAGGTCACCAAAAGTGACTCAATACCCATCAAAGCTCAATGTAAAATATGCAACAAGAAAGTAAGCAAGACAAGTCTCATGAGGCATATGAAATTATTACACAAAGACAACTTACAATTTAACTGTAAGGATTGCAACAGAAACTTCATCTCAAACTTTAGTCTTAAAAAGCATTTGGAGTCAAAACATGGCAGTGAAATTACAGCATCAAAATTGGAGAACTTCGAGTGTGATTTCGATGGAAAAGTGTTCGCAACCAAAAGTCATCTACTTTGTCACATGAGAGTTcatttcttgaaaattaaatgtgaattttgtgatattgAGGTACAGCCAAGGTCTATGACTCAACATATTAAAGATGCCCACATAActgttcataaaaatgttttccaaTGTCAATTctgtcaaaaaagtttcaagtcCATAAATGCATTGAACACTCACGTCAAAAACCACGACAAGAAATGGAAATGcaaaatttgctcaaaaatgTTTCCAAGTCAAGGACATCTAAATCAGCACAAGAgacaatttcatgaaaatccaaatagttttgagtgtgaaatttgtgacaagaagTTCAACTTAAAGCAATCATTGCAAAAACATCAAATGACTCACGACAAGCACCGtccaaaaccattaaaatgtCAACGATGTGACTACGCAACTGATCGCAACACTGActacaaaaatcatcaaaaaactcaCGAATATCAAGATAAAAAACTTGCAACAATGAAAAATCCATTGAATTGTAACAAATGTCCAGCACTTTGCAGGGATAAGCGAGCTTTAAGACAGCATATAAGAATTGTTCATGCAAATAATCCGCATCAATGTGATCTGTGtggaaattattataaaactAAAGGAAACATTCAAAGACACATTAATGGACATATTAAGCAACAAACCTTCCAATTAAAGaagtaa
- Protein Sequence
- MSNKISNFFKVEPKLNAESDLNSGTSVKVKKEQEEHFDIILSEIESKMVKIEEIYSNQPEAWDCRVKLQNIKEEIQNGTTKINKRRTIPRHIVKNSSKVTKSDSIPIKAQCKICNKKVSKTSLMRHMKLLHKDNLQFNCKDCNRNFISNFSLKKHLESKHGSEITASKLENFECDFDGKVFATKSHLLCHMRVHFLKIKCEFCDIEVQPRSMTQHIKDAHITVHKNVFQCQFCQKSFKSINALNTHVKNHDKKWKCKICSKMFPSQGHLNQHKRQFHENPNSFECEICDKKFNLKQSLQKHQMTHDKHRPKPLKCQRCDYATDRNTDYKNHQKTHEYQDKKLATMKNPLNCNKCPALCRDKRALRQHIRIVHANNPHQCDLCGNYYKTKGNIQRHINGHIKQQTFQLKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -