Cten006546.1
Basic Information
- Insect
- Chironomus tentans
- Gene Symbol
- ZFY
- Assembly
- GCA_963573255.1
- Location
- OY754303.1:13521720-13523628[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00029 0.015 15.9 4.5 2 23 184 206 183 206 0.96 2 10 1.8e-05 0.00093 19.7 2.3 1 23 215 238 215 238 0.97 3 10 0.00015 0.0081 16.8 1.8 3 23 271 292 269 292 0.96 4 10 2e-05 0.0011 19.5 0.1 1 23 301 324 301 324 0.94 5 10 2.7e-05 0.0014 19.1 0.3 2 23 339 360 338 360 0.96 6 10 0.0054 0.29 11.9 0.3 2 23 370 392 369 392 0.96 7 10 0.11 6 7.7 1.5 1 23 398 422 398 423 0.95 8 10 0.0046 0.24 12.1 1.7 1 23 428 450 428 450 0.97 9 10 7.1e-05 0.0038 17.8 0.5 1 20 456 477 456 479 0.97 10 10 0.009 0.48 11.2 1.1 1 23 486 511 486 511 0.97
Sequence Information
- Coding Sequence
- ATGATGAATAATGAATTCAGGATATGTCGAATATGTCTAATACATGAAGACGAAGATGAGCTTATTCCAATTTATGAAAAGGATAGTGAAATAGCtacgaaaattttcttattctctGGAATAAAgATTTTAGAGTTTATGAATCATCAAGCTCCAGCACTAATCTGTTCTAGATGTATAAAAGATCTCAACAAAGCTGTAAAGTTTCGAAAAAAGTGCATTGAATcagaaagtcattttaagaactttttccttaattttgagCCATTTCTATGGAATGACGAACTCAGAATTATCAGTTCAGGCAATAATAATCGTAAAACAATAAAAGAGGAACCTGACGAGTACAATAATGtggatttatttgaaaatattgctGCCATAATCGAGGAAAATTGTGCAACAGATTCAATAAGAATATCAAGTCATTCAAAAGCAGGCAAGTCTGATGACGAGAATACCAAAACAGAATGTCCAGAAAAGAAGCGCCGTGTAAAAAGAAAGataaagcatgaaaatgatgaacCTGATTCTGAACTGTCGGAAACTCAATGTCATTTGTGCCTCAAAACATTTACATCAAATCATTCGATGAAAGATCACATGAGGGCTGTGCATCAAAAGTTAAAGGAATCTGACATGTTTAAGTGTGAATATTGTGATCGTCTGTTTAAAATGAGATATTATTTGAatCGTCACATCAAAAATGCCCACACTGAGAAGAAGCCGAAAAAGGAAAAGCAGCCAAAATCAAAATCTAAAAGTGAGGAAGGTGAAGGAATATTTAAGGAGAAGTTAGCAGGAATTAACTGTCCTtactgtaataaatttttaacaagcaGACATAGTTTAAATGACCATGTAAGAGTTAAGCATTCGTTCATTGACTTTGAAGACATGTATTTATGTGATATCTGTGGAAAAGATTTTCCAATCAAGTATTATTTAATAAGACACATACGAGCAGCACATCTCAAAACATTGAcatataagaagaaaaatatcgaATCCCTTCCATGCTCAATTTGTGGAAAAATCCTCAAAAGTAAAGGAAATCTATCGACGCATGAAAAGACTCATAGAAAGCTAACAGCTGACGAATATTGGTACTGTGATTTATGTGGAAACAAATTCAAAGGACGTGGCGAGATGAGTGTTCATATCAAGAAACGACATTTGTATAAAATTAGATATCCTTGTCAAATTTGTCCTGGAAAGTCGTGGAGGACACTGTTTCAACTTCATCGTCACATTAAAGTAATTCATCATAACATCAAGGAATTTAAGTGTGAATGGTGCGGAAAGGAATTTGGAGAGAAGAATAAGCTAATTTGTCATACAAGAATACATACAGGCGAAAAGCCCTTCAAATGCAACTGGGAAGGATGTGATCGAGAATTTACTCATCAGACTGATCTTAGAAGACATTATTGGGGACATACAGGTGAACGTCCTTACAAATGTGATATTCCGAACTGCCTGAAAGGCTTCATGAAGAAGAGTGAACTTTTAGCTCACGAGAATAGATGTCATCCACCTAATCAGCCTCAAATAAGACCAACGACAAATATTCCCATTCAATATCAATACGAAATGttgtaa
- Protein Sequence
- MMNNEFRICRICLIHEDEDELIPIYEKDSEIATKIFLFSGIKILEFMNHQAPALICSRCIKDLNKAVKFRKKCIESESHFKNFFLNFEPFLWNDELRIISSGNNNRKTIKEEPDEYNNVDLFENIAAIIEENCATDSIRISSHSKAGKSDDENTKTECPEKKRRVKRKIKHENDEPDSELSETQCHLCLKTFTSNHSMKDHMRAVHQKLKESDMFKCEYCDRLFKMRYYLNRHIKNAHTEKKPKKEKQPKSKSKSEEGEGIFKEKLAGINCPYCNKFLTSRHSLNDHVRVKHSFIDFEDMYLCDICGKDFPIKYYLIRHIRAAHLKTLTYKKKNIESLPCSICGKILKSKGNLSTHEKTHRKLTADEYWYCDLCGNKFKGRGEMSVHIKKRHLYKIRYPCQICPGKSWRTLFQLHRHIKVIHHNIKEFKCEWCGKEFGEKNKLICHTRIHTGEKPFKCNWEGCDREFTHQTDLRRHYWGHTGERPYKCDIPNCLKGFMKKSELLAHENRCHPPNQPQIRPTTNIPIQYQYEML
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -